Difference between revisions of "GLUTAMATE-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-RXN == * common-name: ** β-ketoacyl-acp synthase ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * common-name: ** glutamate dehydrogenase (nad+) * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-OXOACYL-ACP-SYNTH-RXN ==
+
== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
 
* common-name:
 
* common-name:
−
** β-ketoacyl-acp synthase
+
** glutamate dehydrogenase (nad+)
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_22259]]
−
* Gene: [[E_subulatus_15038]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[E_subulatus_17368]]
−
* Gene: [[E_subulatus_15037]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[E_subulatus_25172]]
−
* Gene: [[E_subulatus_13006]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_22266]]
+
* Gene: [[E_subulatus_25171]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_08948]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13005]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_13004]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_22265]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated:
+
* [[PWY-6728]], methylaspartate cycle:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''12''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V:
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7126]], ethene biosynthesis IV (engineered):
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR115237
+
* METANETX-RXN : MNXR100085
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P23902 P23902]
+
** [http://www.uniprot.org/uniprot/P20016 P20016]
−
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
+
** [http://www.uniprot.org/uniprot/P28997 P28997]
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
** [http://www.uniprot.org/uniprot/P41755 P41755]
−
** [http://www.uniprot.org/uniprot/P43710 P43710]
+
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
−
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
+
** [http://www.uniprot.org/uniprot/P00365 P00365]
−
** [http://www.uniprot.org/uniprot/O67612 O67612]
+
** [http://www.uniprot.org/uniprot/P93541 P93541]
−
** [http://www.uniprot.org/uniprot/P20582 P20582]
+
** [http://www.uniprot.org/uniprot/P80319 P80319]
−
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
+
** [http://www.uniprot.org/uniprot/P24295 P24295]
−
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
+
** [http://www.uniprot.org/uniprot/P27346 P27346]
−
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
+
** [http://www.uniprot.org/uniprot/P33327 P33327]
−
** [http://www.uniprot.org/uniprot/P43711 P43711]
+
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
−
** [http://www.uniprot.org/uniprot/O25284 O25284]
+
** [http://www.uniprot.org/uniprot/O04937 O04937]
−
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
+
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
−
** [http://www.uniprot.org/uniprot/O34340 O34340]
+
** [http://www.uniprot.org/uniprot/O74024 O74024]
−
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
+
** [http://www.uniprot.org/uniprot/O59650 O59650]
−
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
 
−
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
 
−
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 
−
** [http://www.uniprot.org/uniprot/P41175 P41175]
 
−
** [http://www.uniprot.org/uniprot/P31176 P31176]
 
−
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 
−
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 
−
** [http://www.uniprot.org/uniprot/P73283 P73283]
 
−
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 
−
** [http://www.uniprot.org/uniprot/O64485 O64485]
 
−
** [http://www.uniprot.org/uniprot/O65677 O65677]
 
−
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 
−
** [http://www.uniprot.org/uniprot/O23738 O23738]
 
−
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 
−
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 
−
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 
−
** [http://www.uniprot.org/uniprot/O54440 O54440]
 
−
** [http://www.uniprot.org/uniprot/P55338 P55338]
 
−
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
 
</div>
 
</div>
−
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase|&beta;-ketoacyl-acp synthase}}
+
{{#set: common-name=glutamate dehydrogenase (nad+)}}
−
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.86|ec-2.3.1.179|ec-2.3.1.41}}
+
{{#set: ec-number=ec-1.4.1.2}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • common-name:
    • glutamate dehydrogenase (nad+)
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6728, methylaspartate cycle:
    • 12 reactions found over 19 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V:
    • 2 reactions found over 7 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway
  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I:
    • 1 reactions found over 1 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-7126, ethene biosynthesis IV (engineered):
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=GLUTAMATE-DEHYDROGENASE-RXN&oldid=52452"