GPPSYN-RXN
Revision as of 10:44, 15 June 2021 by Bot 0 (talk | contribs) (Created page with "Category:reaction == Reaction GPPSYN-RXN == * common-name: ** prenyltransferase ** geranyl diphosphate synthase ** dimethylallyltranstransferase * direction: ** reversible...")
Contents
Reaction GPPSYN-RXN
- common-name:
- prenyltransferase
- geranyl diphosphate synthase
- dimethylallyltranstransferase
- direction:
- reversible
- ec-number:
Reaction formula
- 1 CPD-4211[c] + 1 DELTA3-ISOPENTENYL-PP[c] <=> 1 GERANYL-PP[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: g13172.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g9359.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g13875.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g13875.t2
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g12669.t1
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: g18026.t1
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: g7763.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g16867.t1
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: g3782.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g3503.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g4713.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g6290.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g9967.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g7849.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g8736.t1
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: g8181.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g8355.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g8606.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g10765.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g14450.t1
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: g11610.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: g11494.t1
- Category: annotation
- Source: cladosiphon_okamuranus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_saccharina_japonica, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6859, all-trans-farnesol biosynthesis:
- 3 reactions found over 4 reactions in the full pathway
- PWY-7736, stellatic acid biosynthesis:
- 3 reactions found over 8 reactions in the full pathway
- PWY-7659, viridicatumtoxin biosynthesis:
- 1 reactions found over 9 reactions in the full pathway
- PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
- 3 reactions found over 3 reactions in the full pathway
- PWY-7709, (3R)-linalool biosynthesis:
- 1 reactions found over 2 reactions in the full pathway
- PWY-7141, (3S)-linalool biosynthesis:
- 1 reactions found over 2 reactions in the full pathway
- PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis:
- 2 reactions found over 5 reactions in the full pathway
- PWY-5122, geranyl diphosphate biosynthesis:
- 1 reactions found over 1 reactions in the full pathway
- PWY-7182, linalool biosynthesis I:
- 1 reactions found over 2 reactions in the full pathway
- PWY-7410, ipsdienol biosynthesis:
- 1 reactions found over 4 reactions in the full pathway
- PWY-7102, bisabolene biosynthesis (engineered):
- 3 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_saccharina_japonica; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: cladosiphon_okamuranus; tool: pathwaytools; comment: n.a
External links