Difference between revisions of "1.14.11.2-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ExchangeSeed-FE+3 == * direction: ** reversible == Reaction formula == * 1.0 FE+3[C-BOUNDARY] '''<=>''' 1.0 FE+3[e] == Gene(s) associ...")
(Created page with "Category:reaction == Reaction RXNARA-8002 == * direction: ** left-to-right * synonymous: ** psase ** geranylgeranyl-diphosphate geranylgeranyltransferase ** prephytoene-di...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-FE+3 ==
+
== Reaction RXNARA-8002 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* synonymous:
 +
** psase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
 +
** prephytoene-diphosphate synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[FE+3]][C-BOUNDARY] '''<=>''' 1.0 [[FE+3]][e]
+
* 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[E_subulatus_18355]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6287]], neurosporene biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5942]], trans-lycopene biosynthesis I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* METANETX-RXN : MNXR108741
−
{{#set: nb gene associated=0}}
+
* RHEA:
−
{{#set: nb pathway associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480]
−
{{#set: reconstruction category=manual}}
+
* LIGAND-RXN:
−
{{#set: reconstruction tool=curation}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: direction=left-to-right}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase|prephytoene-diphosphate synthase}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 15:14, 15 March 2021

Reaction RXNARA-8002

  • direction:
    • left-to-right
  • synonymous:
    • psase
    • geranylgeranyl-diphosphate geranylgeranyltransferase
    • prephytoene-diphosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5942, trans-lycopene biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108741
  • RHEA:
  • LIGAND-RXN:





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=1.14.11.2-RXN&oldid=29466"