Difference between revisions of "RXN-7800"

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(Created page with "Category:reaction == Reaction ARGDECARBOX-RXN == * common-name: ** arginine decarboxylase, biosynthetic * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.19 ec-4.1.1.19]...")
(Created page with "Category:reaction == Reaction RXN-11520 == * direction: ** left-to-right == Reaction formula == * 1 1-7-DIMETHYLXANTHINE[c] '''+''' 1 OXYGEN-MOLECULE[c] '''+''' 1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARGDECARBOX-RXN ==
+
== Reaction RXN-11520 ==
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* common-name:
 
−
** arginine decarboxylase, biosynthetic
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/4.1.1.19 ec-4.1.1.19]
 
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[ARG]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AGMATHINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* 1 [[1-7-DIMETHYLXANTHINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12483]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[E_subulatus_00870]]
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* Gene: [[E_subulatus_13479]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[E_subulatus_07435]]
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* Gene: [[E_subulatus_13477]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[E_subulatus_07434]]
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* Gene: [[E_subulatus_13480]]
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** Category: [[orthology]]
−
** Category: [[annotation]]
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13478]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13476]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13481]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13475]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
+
* [[PWY-6632]], caffeine degradation IV (bacteria, via demethylation and oxidation):
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** '''4''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-43]], putrescine biosynthesis II:
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-6305]], superpathway of putrescine biosynthesis:
 
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** '''3''' reactions found over '''n.a''' reactions in the full pathway
 
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* [[PWY0-1299]], arginine dependent acid resistance:
 
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** '''1''' reactions found over '''1''' reactions in the full pathway
 
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* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway):
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-40]], putrescine biosynthesis I:
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-6834]], spermidine biosynthesis III:
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR111560
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* METANETX-RXN : MNXR95940
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17644 17644]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00566 R00566]
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** [http://www.genome.jp/dbget-bin/www_bget?R07977 R07977]
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* UNIPROT:
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{{#set: direction=left-to-right}}
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** [http://www.uniprot.org/uniprot/P21170 P21170]
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{{#set: nb gene associated=3}}
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** [http://www.uniprot.org/uniprot/Q9PPF5 Q9PPF5]
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{{#set: nb pathway associated=1}}
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** [http://www.uniprot.org/uniprot/Q9JT25 Q9JT25]
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{{#set: reconstruction category=orthology}}
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** [http://www.uniprot.org/uniprot/P49726 P49726]
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{{#set: reconstruction tool=pantograph}}
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** [http://www.uniprot.org/uniprot/P22220 P22220]
 
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** [http://www.uniprot.org/uniprot/P28629 P28629]
 
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** [http://www.uniprot.org/uniprot/Q43075 Q43075]
 
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** [http://www.uniprot.org/uniprot/Q9SI64 Q9SI64]
 
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** [http://www.uniprot.org/uniprot/P72587 P72587]
 
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** [http://www.uniprot.org/uniprot/P74576 P74576]
 
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** [http://www.uniprot.org/uniprot/O24128 O24128]
 
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** [http://www.uniprot.org/uniprot/O23141 O23141]
 
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** [http://www.uniprot.org/uniprot/Q39827 Q39827]
 
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** [http://www.uniprot.org/uniprot/O81161 O81161]
 
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** [http://www.uniprot.org/uniprot/O04429 O04429]
 
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** [http://www.uniprot.org/uniprot/Q96412 Q96412]
 
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** [http://www.uniprot.org/uniprot/O81177 O81177]
 
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** [http://www.uniprot.org/uniprot/O64453 O64453]
 
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</div>
 
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{{#set: common-name=arginine decarboxylase, biosynthetic}}
 
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{{#set: ec-number=ec-4.1.1.19}}
 
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{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=7}}
 
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{{#set: nb pathway associated=7}}
 
−
{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}

Revision as of 19:04, 17 March 2021

Reaction RXN-11520

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6632, caffeine degradation IV (bacteria, via demethylation and oxidation):
    • 4 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR111560
  • LIGAND-RXN:




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