Difference between revisions of "RXN-11667"

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(Created page with "Category:reaction == Reaction SUCCCOASYN-RXN == * common-name: ** succinyl-coa synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5] * direction: **...")
(Created page with "Category:reaction == Reaction RXN-11667 == * common-name: ** (s)-3-hydroxybutanoyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.150 ec-4.2.1.150] *...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCCOASYN-RXN ==
+
== Reaction RXN-11667 ==
 
* common-name:
 
* common-name:
−
** succinyl-coa synthetase
+
** (s)-3-hydroxybutanoyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5]
+
** [http://enzyme.expasy.org/EC/4.2.1.150 ec-4.2.1.150]
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* synonymous:
 
−
** succinyl coa synthesis
 
−
** succinate thiokinase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
* 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[CROTONYL-COA]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[EsuBft327_5a]]
−
* Gene: [[E_subulatus_17383]]
+
** Category: [[manual]]
−
** Category: [[annotation]]
+
*** Source: [[esub_adding_annot_form]], Tool: [[unknown-tool]], Assignment: n.a, Comment: annotation
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[EsuBft1203_2a]]
−
* Gene: [[E_subulatus_00867]]
+
** Category: [[manual]]
−
** Category: [[annotation]]
+
*** Source: [[esub_adding_annot_form]], Tool: [[unknown-tool]], Assignment: n.a, Comment: annotation
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[E_subulatus_13805]]
−
* Gene: [[E_subulatus_12371]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_17382]]
+
* Gene: [[E_subulatus_02116]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_17381]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02430]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_02431]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6583]], pyruvate fermentation to butanol I:
−
* [[PWY-5538]], pyruvate fermentation to acetate VI:
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''12''' reactions found over '''19''' reactions in the full pathway
 
−
* [[P42-PWY]], incomplete reductive TCA cycle:
 
 
** '''4''' reactions found over '''7''' reactions in the full pathway
 
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5392]], reductive TCA cycle II:
+
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
−
** '''5''' reactions found over '''12''' reactions in the full pathway
+
** '''5''' reactions found over '''10''' reactions in the full pathway
−
* [[P23-PWY]], reductive TCA cycle I:
+
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
** '''4''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
+
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
−
** '''10''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''11''' reactions in the full pathway
−
* [[TCA]], TCA cycle I (prokaryotic):
+
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
** '''9''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
+
* [[PWY-5177]], glutaryl-CoA degradation:
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5537]], pyruvate fermentation to acetate V:
+
* [[P3-PWY]], gallate degradation III (anaerobic):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
+
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered):
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR97883
−
* METANETX-RXN : MNXR104635
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26561 26561]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
−
* UNIPROT:
+
{{#set: common-name=(s)-3-hydroxybutanoyl-coa dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/O28098 O28098]
+
{{#set: ec-number=ec-4.2.1.150}}
−
** [http://www.uniprot.org/uniprot/P53594 P53594]
 
−
** [http://www.uniprot.org/uniprot/O28733 O28733]
 
−
** [http://www.uniprot.org/uniprot/P45101 P45101]
 
−
** [http://www.uniprot.org/uniprot/P45102 P45102]
 
−
** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
 
−
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
 
−
** [http://www.uniprot.org/uniprot/O26663 O26663]
 
−
** [http://www.uniprot.org/uniprot/P80886 P80886]
 
−
** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
 
−
** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
 
−
** [http://www.uniprot.org/uniprot/P80865 P80865]
 
−
** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
 
−
** [http://www.uniprot.org/uniprot/O67729 O67729]
 
−
** [http://www.uniprot.org/uniprot/O67546 O67546]
 
−
** [http://www.uniprot.org/uniprot/P53593 P53593]
 
−
** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
 
−
** [http://www.uniprot.org/uniprot/P0A836 P0A836]
 
−
** [http://www.uniprot.org/uniprot/O82662 O82662]
 
−
</div>
 
−
{{#set: common-name=succinyl-coa synthetase}}
 
−
{{#set: ec-number=ec-6.2.1.5}}
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: synonymous=succinate thiokinase|succinyl coa synthesis}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb pathway associated=9}}
−
{{#set: nb pathway associated=12}}
+
{{#set: reconstruction category=manual|orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph|curation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction comment=annotation|n.a}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|esub_adding_annot_form}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 

Latest revision as of 19:37, 17 March 2021

Reaction RXN-11667

  • common-name:
    • (s)-3-hydroxybutanoyl-coa dehydrogenase
  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6583, pyruvate fermentation to butanol I:
    • 6 reactions found over 8 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate:
    • 4 reactions found over 7 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate):
    • 4 reactions found over 15 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered):
    • 6 reactions found over 11 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 9 reactions found over 18 reactions in the full pathway
  • PWY-5177, glutaryl-CoA degradation:
    • 3 reactions found over 5 reactions in the full pathway
  • P3-PWY, gallate degradation III (anaerobic):
    • 3 reactions found over 11 reactions in the full pathway
  • PWY-6883, pyruvate fermentation to butanol II (engineered):
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97883
  • RHEA:
  • LIGAND-RXN:





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=RXN-11667&oldid=50542"