Difference between revisions of "3.1.27.9-RXN"

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(Created page with "Category:reaction == Reaction RXN0-882 == * common-name: ** 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.7.1 ec-1...")
(Created page with "Category:reaction == Reaction 3.1.27.9-RXN == * common-name: ** trna-intron endonuclease * ec-number: ** [http://enzyme.expasy.org/EC/4.6.1.16 ec-4.6.1.16] * direction: **...")
 
(2 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-882 ==
+
== Reaction 3.1.27.9-RXN ==
 
* common-name:
 
* common-name:
−
** 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
+
** trna-intron endonuclease
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.7.1 ec-1.17.7.1]
+
** [http://enzyme.expasy.org/EC/4.6.1.16 ec-4.6.1.16]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_11846]]
+
* Gene: [[E_subulatus_08301]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_16043]]
+
* Gene: [[E_subulatus_08300]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-6689]], tRNA splicing I:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7803]], tRNA splicing II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : LIGAND-RXN
+
* METANETX-RXN : MNXR115290
−
* ID : R08689
+
* UNIPROT:
−
{{#set: common-name=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase}}
+
** [http://www.uniprot.org/uniprot/O07118 O07118]
−
{{#set: ec-number=ec-1.17.7.1}}
+
{{#set: common-name=trna-intron endonuclease}}
 +
{{#set: ec-number=ec-4.6.1.16}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:39, 17 March 2021

Reaction 3.1.27.9-RXN

  • common-name:
    • trna-intron endonuclease
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6689, tRNA splicing I:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7803, tRNA splicing II:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR115290
  • UNIPROT:





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