Difference between revisions of "3.1.27.9-RXN"

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(Created page with "Category:reaction == Reaction 3.2.1.96-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1.96 ec-3.2.1.96] * direction: ** left-to-right == Reaction formula == * 1 [...")
 
(Created page with "Category:reaction == Reaction 3.1.27.9-RXN == * common-name: ** trna-intron endonuclease * ec-number: ** [http://enzyme.expasy.org/EC/4.6.1.16 ec-4.6.1.16] * direction: **...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.96-RXN ==
+
== Reaction 3.1.27.9-RXN ==
 +
* common-name:
 +
** trna-intron endonuclease
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.96 ec-3.2.1.96]
+
** [http://enzyme.expasy.org/EC/4.6.1.16 ec-4.6.1.16]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[WATER]][c] '''+''' 1 [[a-glycopeptide-D-mannosyl-Nsup4sup-N-ace]][c] '''=>''' 1 [[CPD-14375]][c] '''+''' 1 [[N-acetyl-D-glucosamine-asparagine]][c]
+
* 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_20953]]
+
* Gene: [[E_subulatus_08301]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_20954]]
+
* Gene: [[E_subulatus_08300]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_20952]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6689]], tRNA splicing I:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7803]], tRNA splicing II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : UNIPROT
+
* METANETX-RXN : MNXR115290
−
* ID : P04067
+
* UNIPROT:
−
{{#set: ec-number=ec-3.2.1.96}}
+
** [http://www.uniprot.org/uniprot/O07118 O07118]
 +
{{#set: common-name=trna-intron endonuclease}}
 +
{{#set: ec-number=ec-4.6.1.16}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:39, 17 March 2021

Reaction 3.1.27.9-RXN

  • common-name:
    • trna-intron endonuclease
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6689, tRNA splicing I:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7803, tRNA splicing II:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR115290
  • UNIPROT:





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