Difference between revisions of "3.5.1.88-RXN"

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(Created page with "Category:reaction == Reaction AICARSYN-RXN == * common-name: ** 5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction 3.5.1.88-RXN == * common-name: ** peptide deformylase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.88 ec-3.5.1.88] * direction: ** left...")
 
(2 intermediate revisions by one other user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AICARSYN-RXN ==
+
== Reaction 3.5.1.88-RXN ==
 
* common-name:
 
* common-name:
−
** 5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase
+
** peptide deformylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2]
+
** [http://enzyme.expasy.org/EC/3.5.1.88 ec-3.5.1.88]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''<=>''' 1 [[AICAR]][c] '''+''' 1 [[FUM]][c]
+
* 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[METHIONYL-PEPTIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_00370]]
+
* Gene: [[E_subulatus_16900]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : RHEA
+
* METANETX-RXN : MNXR109727
−
* ID : 23920
+
* RHEA:
−
{{#set: common-name=5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24421 24421]
−
{{#set: ec-number=ec-4.3.2.2}}
+
* LIGAND-RXN:
−
{{#set: direction=reversible}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635]
 +
{{#set: common-name=peptide deformylase}}
 +
{{#set: ec-number=ec-3.5.1.88}}
 +
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction 3.5.1.88-RXN

  • common-name:
    • peptide deformylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR109727
  • RHEA:
  • LIGAND-RXN:





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