Difference between revisions of "ADENOSYLHOMOCYSTEINASE-RXN"

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(Created page with "Category:reaction == Reaction GCVT-RXN == * common-name: ** aminomethyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10] * direction: ** rever...")
(Created page with "Category:reaction == Reaction MALIC-NADP-RXN == * common-name: ** malate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40] * direction: ** l...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GCVT-RXN ==
+
== Reaction MALIC-NADP-RXN ==
 
* common-name:
 
* common-name:
−
** aminomethyltransferase
+
** malate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10]
+
** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
+
* 1 [[MAL]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_02309]]
+
* Gene: [[E_subulatus_23249]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_02306]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_23248]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_02307]]
+
* Gene: [[E_subulatus_23247]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_02310]]
+
* Gene: [[E_subulatus_23246]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_02308]]
+
* Gene: [[E_subulatus_23250]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYCLEAV-PWY]], glycine cleavage:
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''9''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I:
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR115909
+
* METANETX-RXN : MNXR101443
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18254 18254]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216]
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P25285 P25285]
+
** [http://www.uniprot.org/uniprot/P12628 P12628]
−
** [http://www.uniprot.org/uniprot/P28337 P28337]
+
** [http://www.uniprot.org/uniprot/P06801 P06801]
−
** [http://www.uniprot.org/uniprot/P27248 P27248]
+
** [http://www.uniprot.org/uniprot/P13697 P13697]
−
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
+
** [http://www.uniprot.org/uniprot/P16243 P16243]
−
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
+
** [http://www.uniprot.org/uniprot/O48656 O48656]
−
** [http://www.uniprot.org/uniprot/P48728 P48728]
+
** [http://www.uniprot.org/uniprot/P22178 P22178]
−
** [http://www.uniprot.org/uniprot/P49364 P49364]
+
** [http://www.uniprot.org/uniprot/P93139 P93139]
−
** [http://www.uniprot.org/uniprot/P49095 P49095]
+
** [http://www.uniprot.org/uniprot/P34105 P34105]
−
** [http://www.uniprot.org/uniprot/P49363 P49363]
+
** [http://www.uniprot.org/uniprot/P28227 P28227]
−
** [http://www.uniprot.org/uniprot/P54260 P54260]
+
** [http://www.uniprot.org/uniprot/P36444 P36444]
−
** [http://www.uniprot.org/uniprot/P49361 P49361]
+
** [http://www.uniprot.org/uniprot/P40927 P40927]
−
** [http://www.uniprot.org/uniprot/P49362 P49362]
+
** [http://www.uniprot.org/uniprot/P37223 P37223]
−
** [http://www.uniprot.org/uniprot/O49954 O49954]
+
** [http://www.uniprot.org/uniprot/P48163 P48163]
−
** [http://www.uniprot.org/uniprot/P93256 P93256]
+
** [http://www.uniprot.org/uniprot/Q16798 Q16798]
−
** [http://www.uniprot.org/uniprot/O32955 O32955]
+
** [http://www.uniprot.org/uniprot/O50015 O50015]
 +
** [http://www.uniprot.org/uniprot/O04935 O04935]
 +
** [http://www.uniprot.org/uniprot/O04936 O04936]
 +
** [http://www.uniprot.org/uniprot/P37222 P37222]
 +
** [http://www.uniprot.org/uniprot/Q42888 Q42888]
 +
** [http://www.uniprot.org/uniprot/Q42889 Q42889]
 
</div>
 
</div>
−
{{#set: common-name=aminomethyltransferase}}
+
{{#set: common-name=malate dehydrogenase}}
−
{{#set: ec-number=ec-2.1.2.10}}
+
{{#set: ec-number=ec-1.1.1.40}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=5}}
 
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:07, 17 March 2021

Reaction MALIC-NADP-RXN

  • common-name:
    • malate dehydrogenase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 9 reactions found over 14 reactions in the full pathway
  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type:
    • 4 reactions found over 7 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 13 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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