Difference between revisions of "RXN-12056"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 1.14.11.2-RXN == * common-name: ** prolyl 4-hydroxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.2 ec-1.14.11.2] * direction: **...")
(Created page with "Category:reaction == Reaction RXN-12056 == * direction: ** left-to-right * ec_number: ** ec-6.5.1 == Reaction formula == * 2 ATP[c] '''+''' 1 Pre-tRNA-3-prime-half-m...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 1.14.11.2-RXN ==
+
== Reaction RXN-12056 ==
* common-name:
 
** prolyl 4-hydroxylase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/1.14.11.2 ec-1.14.11.2]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* ec_number:
 +
** ec-6.5.1
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROCOLLAGEN-L-PROLINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c] '''+''' 1 [[SUC]][c]
+
* 2 [[ATP]][c] '''+''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-phospho-ligated-tRNA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[E_subulatus_17536]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_16982]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_16980]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_02339]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_17537]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_16981]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7894]], procollagen hydroxylation and glycosylation:
+
* [[PWY-6689]], tRNA splicing I:
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR114916
+
* METANETX-RXN : MNXR117323
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18946 18946]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P21195 P21195]
 
** [http://www.uniprot.org/uniprot/Q10576 Q10576]
 
** [http://www.uniprot.org/uniprot/P16924 P16924]
 
** [http://www.uniprot.org/uniprot/P13674 P13674]
 
** [http://www.uniprot.org/uniprot/P05307 P05307]
 
** [http://www.uniprot.org/uniprot/P09102 P09102]
 
** [http://www.uniprot.org/uniprot/P07237 P07237]
 
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
 
** [http://www.uniprot.org/uniprot/P04785 P04785]
 
** [http://www.uniprot.org/uniprot/P54001 P54001]
 
{{#set: common-name=prolyl 4-hydroxylase}}
 
{{#set: ec-number=ec-1.14.11.2}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: nb gene associated=6}}
+
{{#set: ec_number=ec-6.5.1}}
 +
{{#set: nb gene associated=0}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=annotation}}
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=esub_adding_annot_form}}

Latest revision as of 19:37, 17 March 2021

Reaction RXN-12056

  • direction:
    • left-to-right
  • ec_number:
    • ec-6.5.1

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6689, tRNA splicing I:
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117323