Difference between revisions of "ASNSYNB-RXN"

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(Created page with "Category:reaction == Reaction RXN0-722 == * common-name: ** 2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase ** ribonucleoside-diphosp...")
(Created page with "Category:reaction == Reaction ASNSYNB-RXN == * common-name: ** l-aspartate:l-glutamine amido-ligase (amp-forming) ** asparagine synthase (glutamine-hydrolyzing) * ec-numbe...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-722 ==
+
== Reaction ASNSYNB-RXN ==
 
* common-name:
 
* common-name:
−
** 2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase
+
** l-aspartate:l-glutamine amido-ligase (amp-forming)
−
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
+
** asparagine synthase (glutamine-hydrolyzing)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
+
** [http://enzyme.expasy.org/EC/6.3.5.4 ec-6.3.5.4]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Reduced-NrdH-Proteins]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[DUDP]][c] '''+''' 1 [[Oxidized-NrdH-Proteins]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_20465]]
+
* Gene: [[E_subulatus_00580]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_15745]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_15542]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_15746]]
+
* Gene: [[E_subulatus_09531]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_25205]]
+
* Gene: [[E_subulatus_09532]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_20463]]
+
* Gene: [[E_subulatus_00581]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16362]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16360]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16363]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_25204]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_17311]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_07745]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16361]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_20464]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_18208]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_17312]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_17309]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16358]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_07744]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16359]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_15977]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_11791]]
+
* Gene: [[E_subulatus_15541]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_17310]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
+
* [[ASPARAGINE-BIOSYNTHESIS]], L-asparagine biosynthesis I:
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR123400
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor|2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase}}
+
* METANETX-RXN : MNXR96059
−
{{#set: ec-number=ec-1.17.4.1}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12229 12229]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00578 R00578]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P22106 P22106]
 +
** [http://www.uniprot.org/uniprot/P08243 P08243]
 +
** [http://www.uniprot.org/uniprot/P19891 P19891]
 +
** [http://www.uniprot.org/uniprot/P17714 P17714]
 +
** [http://www.uniprot.org/uniprot/P19251 P19251]
 +
** [http://www.uniprot.org/uniprot/P19252 P19252]
 +
** [http://www.uniprot.org/uniprot/Q58516 Q58516]
 +
** [http://www.uniprot.org/uniprot/Q9CDJ2 Q9CDJ2]
 +
** [http://www.uniprot.org/uniprot/Q9UZJ0 Q9UZJ0]
 +
** [http://www.uniprot.org/uniprot/O58829 O58829]
 +
** [http://www.uniprot.org/uniprot/Q9UZL3 Q9UZL3]
 +
** [http://www.uniprot.org/uniprot/O26514 O26514]
 +
** [http://www.uniprot.org/uniprot/Q42792 Q42792]
 +
** [http://www.uniprot.org/uniprot/P31752 P31752]
 +
** [http://www.uniprot.org/uniprot/P49091 P49091]
 +
** [http://www.uniprot.org/uniprot/P49089 P49089]
 +
** [http://www.uniprot.org/uniprot/P49088 P49088]
 +
** [http://www.uniprot.org/uniprot/P49090 P49090]
 +
** [http://www.uniprot.org/uniprot/P49092 P49092]
 +
** [http://www.uniprot.org/uniprot/P49093 P49093]
 +
** [http://www.uniprot.org/uniprot/P49094 P49094]
 +
** [http://www.uniprot.org/uniprot/Q43011 Q43011]
 +
** [http://www.uniprot.org/uniprot/P93167 P93167]
 +
** [http://www.uniprot.org/uniprot/O49076 O49076]
 +
** [http://www.uniprot.org/uniprot/P49078 P49078]
 +
** [http://www.uniprot.org/uniprot/Q21463 Q21463]
 +
** [http://www.uniprot.org/uniprot/O77330 O77330]
 +
** [http://www.uniprot.org/uniprot/P78753 P78753]
 +
** [http://www.uniprot.org/uniprot/Q9LFU1 Q9LFU1]
 +
** [http://www.uniprot.org/uniprot/Q9ZST7 Q9ZST7]
 +
</div>
 +
{{#set: common-name=asparagine synthase (glutamine-hydrolyzing)|l-aspartate:l-glutamine amido-ligase (amp-forming)}}
 +
{{#set: ec-number=ec-6.3.5.4}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=22}}
+
{{#set: nb gene associated=6}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction ASNSYNB-RXN

  • common-name:
    • l-aspartate:l-glutamine amido-ligase (amp-forming)
    • asparagine synthase (glutamine-hydrolyzing)
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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