Difference between revisions of "GLUTARATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction 6PFRUCTPHOS-RXN == * common-name: ** 6-phosphofructokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.11 ec-2.7.1.11] * direction: **...")
(Created page with "Category:reaction == Reaction GLUTARATE-SEMIALDEHYDE-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.20 ec-1.2.1.20] * direction: ** left-to-right...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 6PFRUCTPHOS-RXN ==
+
== Reaction GLUTARATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ==
−
* common-name:
 
−
** 6-phosphofructokinase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.11 ec-2.7.1.11]
+
** [http://enzyme.expasy.org/EC/1.2.1.20 ec-1.2.1.20]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[FRUCTOSE-6P]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-280]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_18015]]
−
* Gene: [[E_subulatus_12441]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_03415]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_11500]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_12443]]
+
* Gene: [[E_subulatus_03414]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_11499]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_12442]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_18454]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_12444]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
+
* [[LYSDEGII-PWY]], L-lysine degradation III:
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered):
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
−
** '''11''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''12''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
−
** '''11''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR102248
−
* METANETX-RXN : MNXR102513
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16110 16110]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12065 12065]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00756 R00756]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02401 R02401]
−
* UNIPROT:
+
{{#set: ec-number=ec-1.2.1.20}}
−
** [http://www.uniprot.org/uniprot/Q7M3F7 Q7M3F7]
 
−
** [http://www.uniprot.org/uniprot/Q7M4J2 Q7M4J2]
 
−
** [http://www.uniprot.org/uniprot/P12382 P12382]
 
−
** [http://www.uniprot.org/uniprot/Q27665 Q27665]
 
−
** [http://www.uniprot.org/uniprot/P52034 P52034]
 
−
** [http://www.uniprot.org/uniprot/Q7M4K9 Q7M4K9]
 
−
** [http://www.uniprot.org/uniprot/P43863 P43863]
 
−
** [http://www.uniprot.org/uniprot/P20275 P20275]
 
−
** [http://www.uniprot.org/uniprot/P47457 P47457]
 
−
** [http://www.uniprot.org/uniprot/Q01813 Q01813]
 
−
** [http://www.uniprot.org/uniprot/Q07636 Q07636]
 
−
** [http://www.uniprot.org/uniprot/P16861 P16861]
 
−
** [http://www.uniprot.org/uniprot/P16862 P16862]
 
−
** [http://www.uniprot.org/uniprot/P00512 P00512]
 
−
** [http://www.uniprot.org/uniprot/P0A796 P0A796]
 
−
** [http://www.uniprot.org/uniprot/P06999 P06999]
 
−
** [http://www.uniprot.org/uniprot/P08237 P08237]
 
−
** [http://www.uniprot.org/uniprot/P00511 P00511]
 
−
** [http://www.uniprot.org/uniprot/P70927 P70927]
 
−
** [http://www.uniprot.org/uniprot/Q7M3F5 Q7M3F5]
 
−
** [http://www.uniprot.org/uniprot/Q9TWY0 Q9TWY0]
 
−
** [http://www.uniprot.org/uniprot/P30835 P30835]
 
−
** [http://www.uniprot.org/uniprot/Q03215 Q03215]
 
−
** [http://www.uniprot.org/uniprot/Q03216 Q03216]
 
−
** [http://www.uniprot.org/uniprot/P80019 P80019]
 
−
** [http://www.uniprot.org/uniprot/Q59214 Q59214]
 
−
** [http://www.uniprot.org/uniprot/Q27705 Q27705]
 
−
** [http://www.uniprot.org/uniprot/P75476 P75476]
 
−
** [http://www.uniprot.org/uniprot/P72830 P72830]
 
−
** [http://www.uniprot.org/uniprot/Q55988 Q55988]
 
−
** [http://www.uniprot.org/uniprot/Q49084 Q49084]
 
−
** [http://www.uniprot.org/uniprot/O08333 O08333]
 
−
</div>
 
−
{{#set: common-name=6-phosphofructokinase}}
 
−
{{#set: ec-number=ec-2.7.1.11}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction GLUTARATE-SEMIALDEHYDE-DEHYDROGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LYSDEGII-PWY, L-lysine degradation III:
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102248
  • RHEA:
  • LIGAND-RXN:





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