Difference between revisions of "ExchangeSeed-AMP"

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(Created page with "Category:reaction == Reaction RNA-LIGASE-ATP-RXN == * common-name: ** rna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.3 ec-6.5.1.3] * direction: ** lef...")
(Created page with "Category:reaction == Reaction ExchangeSeed-AMP == * direction: ** reversible == Reaction formula == * 1.0 AMP[C-BOUNDARY] '''<=>''' 1.0 AMP[e] == Gene(s) associate...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RNA-LIGASE-ATP-RXN ==
+
== Reaction ExchangeSeed-AMP ==
* common-name:
 
** rna ligase (atp)
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/6.5.1.3 ec-6.5.1.3]
 
 
* direction:
 
* direction:
** left-to-right
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** reversible
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[3Prime-OH-Terminated-RNAs]][c] '''+''' 1 [[5-Phospho-RNA]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[RNA-Holder]][c]
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* 1.0 [[AMP]][C-BOUNDARY] '''<=>''' 1.0 [[AMP]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[E_subulatus_21195]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_21194]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR116261
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{{#set: direction=reversible}}
* LIGAND-RXN:
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{{#set: nb gene associated=0}}
** [http://www.genome.jp/dbget-bin/www_bget?R07640 R07640]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P00971 P00971]
 
{{#set: common-name=rna ligase (atp)}}
 
{{#set: ec-number=ec-6.5.1.3}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=import_from_medium}}

Latest revision as of 19:39, 17 March 2021

Reaction ExchangeSeed-AMP

  • direction:
    • reversible

Reaction formula

  • 1.0 AMP[C-BOUNDARY] <=> 1.0 AMP[e]

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links