Difference between revisions of "RXN-15581"

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(Created page with "Category:reaction == Reaction RXN-9533 == * common-name: ** (3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1....")
(Created page with "Category:reaction == Reaction RXN-15581 == * common-name: ** d-serine ammonia-lyase (pyruvate-forming) * direction: ** left-to-right == Reaction formula == * 1 [[D-SERINE]...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-9533 ==
+
== Reaction RXN-15581 ==
 
* common-name:
 
* common-name:
** (3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratase
+
** d-serine ammonia-lyase (pyruvate-forming)
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[R-3-hydroxydodecanoyl-ACPs]][c] '''=>''' 1 [[Dodec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[D-SERINE]][c] '''=>''' 1 [[2-AMINOACRYLATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[E_subulatus_15038]]
+
* Gene: [[E_subulatus_05629]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[E_subulatus_18602]]
+
* Gene: [[E_subulatus_05630]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[E_subulatus_15037]]
+
* Gene: [[E_subulatus_08899]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7664]], oleate biosynthesis IV (anaerobic):
+
* [[PWY0-1535]], D-serine degradation:
** '''13''' reactions found over '''14''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
 
** '''30''' reactions found over '''31''' reactions in the full pathway
 
* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
 
** '''30''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR122851
+
* METANETX-RXN : MNXR119463
{{#set: common-name=(3r)-3-hydroxydodecanoyl-[acyl-carrier protein] dehydratase}}
+
* RHEA:
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43009 43009]
 +
{{#set: common-name=d-serine ammonia-lyase (pyruvate-forming)}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction RXN-15581

  • common-name:
    • d-serine ammonia-lyase (pyruvate-forming)
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1535, D-serine degradation:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119463
  • RHEA: