Difference between revisions of "GLYCINE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 2PGADEHYDRAT-RXN == * common-name: ** phosphopyruvate hydratase ** enolase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11]...")
(Created page with "Category:reaction == Reaction GLYCINE--TRNA-LIGASE-RXN == * common-name: ** glycine-trna ligase ** glycine—trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2PGADEHYDRAT-RXN ==
+
== Reaction GLYCINE--TRNA-LIGASE-RXN ==
 
* common-name:
 
* common-name:
−
** phosphopyruvate hydratase
+
** glycine-trna ligase
−
** enolase
+
** glycine—trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11]
+
** [http://enzyme.expasy.org/EC/6.1.1.14 ec-6.1.1.14]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-PG]][c] '''<=>''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_03226]]
−
* Gene: [[E_subulatus_16456]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_03608]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16454]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_18121]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_16508]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_16455]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_16452]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_16451]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21947]]
+
* Gene: [[E_subulatus_15126]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_03609]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_16453]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_01963]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_01962]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
** '''9''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY66-399]], gluconeogenesis III:
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-8004]], Entner-Doudoroff pathway I:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7003]], glycerol degradation to butanol:
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''11''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
−
** '''11''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
−
** '''11''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''12''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 
−
** '''7''' reactions found over '''4''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation:
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
−
** '''9''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7124]], ethene biosynthesis V (engineered):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR97932
+
* METANETX-RXN : MNXR115938
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10167 10167]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16014 16014]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P04764 P04764]
+
** [http://www.uniprot.org/uniprot/P41250 P41250]
−
** [http://www.uniprot.org/uniprot/P07322 P07322]
+
** [http://www.uniprot.org/uniprot/P54380 P54380]
−
** [http://www.uniprot.org/uniprot/P07323 P07323]
+
** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
−
** [http://www.uniprot.org/uniprot/P06733 P06733]
+
** [http://www.uniprot.org/uniprot/P43822 P43822]
−
** [http://www.uniprot.org/uniprot/P19140 P19140]
+
** [http://www.uniprot.org/uniprot/P54381 P54381]
−
** [http://www.uniprot.org/uniprot/P25704 P25704]
+
** [http://www.uniprot.org/uniprot/O51344 O51344]
−
** [http://www.uniprot.org/uniprot/P30575 P30575]
+
** [http://www.uniprot.org/uniprot/Q46371 Q46371]
−
** [http://www.uniprot.org/uniprot/P33675 P33675]
+
** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
−
** [http://www.uniprot.org/uniprot/P47647 P47647]
+
** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
−
** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
+
** [http://www.uniprot.org/uniprot/P43821 P43821]
−
** [http://www.uniprot.org/uniprot/P37869 P37869]
+
** [http://www.uniprot.org/uniprot/O83678 O83678]
−
** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
+
** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
−
** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
+
** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
−
** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
+
** [http://www.uniprot.org/uniprot/P56454 P56454]
−
** [http://www.uniprot.org/uniprot/P43806 P43806]
+
** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
−
** [http://www.uniprot.org/uniprot/P42448 P42448]
+
** [http://www.uniprot.org/uniprot/Q57681 Q57681]
−
** [http://www.uniprot.org/uniprot/P42848 P42848]
+
** [http://www.uniprot.org/uniprot/P67029 P67029]
−
** [http://www.uniprot.org/uniprot/Q05524 Q05524]
+
** [http://www.uniprot.org/uniprot/O67081 O67081]
−
** [http://www.uniprot.org/uniprot/P42897 P42897]
+
** [http://www.uniprot.org/uniprot/O67898 O67898]
−
** [http://www.uniprot.org/uniprot/P40370 P40370]
+
** [http://www.uniprot.org/uniprot/O59235 O59235]
−
** [http://www.uniprot.org/uniprot/P51913 P51913]
+
** [http://www.uniprot.org/uniprot/P47493 P47493]
−
** [http://www.uniprot.org/uniprot/P26300 P26300]
+
** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
−
** [http://www.uniprot.org/uniprot/Q42887 Q42887]
+
** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
−
** [http://www.uniprot.org/uniprot/P25696 P25696]
+
** [http://www.uniprot.org/uniprot/P56453 P56453]
−
** [http://www.uniprot.org/uniprot/P00924 P00924]
+
** [http://www.uniprot.org/uniprot/O27874 O27874]
−
** [http://www.uniprot.org/uniprot/P00925 P00925]
+
** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
−
** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
+
** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
−
** [http://www.uniprot.org/uniprot/P29201 P29201]
+
** [http://www.uniprot.org/uniprot/P38088 P38088]
−
** [http://www.uniprot.org/uniprot/P09104 P09104]
+
** [http://www.uniprot.org/uniprot/Q06817 Q06817]
−
** [http://www.uniprot.org/uniprot/P21550 P21550]
+
** [http://www.uniprot.org/uniprot/Q51114 Q51114]
−
** [http://www.uniprot.org/uniprot/P08734 P08734]
+
** [http://www.uniprot.org/uniprot/P75425 P75425]
−
** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
+
** [http://www.uniprot.org/uniprot/Q55716 Q55716]
−
** [http://www.uniprot.org/uniprot/P15429 P15429]
+
** [http://www.uniprot.org/uniprot/P00960 P00960]
−
** [http://www.uniprot.org/uniprot/P13929 P13929]
+
** [http://www.uniprot.org/uniprot/P00961 P00961]
−
** [http://www.uniprot.org/uniprot/P15007 P15007]
+
** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
−
** [http://www.uniprot.org/uniprot/P17182 P17182]
 
−
** [http://www.uniprot.org/uniprot/P17183 P17183]
 
−
** [http://www.uniprot.org/uniprot/P26301 P26301]
 
−
** [http://www.uniprot.org/uniprot/P31683 P31683]
 
−
** [http://www.uniprot.org/uniprot/Q54274 Q54274]
 
−
** [http://www.uniprot.org/uniprot/P42896 P42896]
 
−
** [http://www.uniprot.org/uniprot/Q27727 Q27727]
 
−
** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
 
−
** [http://www.uniprot.org/uniprot/P48285 P48285]
 
−
** [http://www.uniprot.org/uniprot/Q12007 Q12007]
 
−
** [http://www.uniprot.org/uniprot/P42222 P42222]
 
−
** [http://www.uniprot.org/uniprot/P75189 P75189]
 
−
** [http://www.uniprot.org/uniprot/P77972 P77972]
 
−
** [http://www.uniprot.org/uniprot/Q49059 Q49059]
 
−
** [http://www.uniprot.org/uniprot/P42895 P42895]
 
−
** [http://www.uniprot.org/uniprot/Q42971 Q42971]
 
−
** [http://www.uniprot.org/uniprot/Q43130 Q43130]
 
−
** [http://www.uniprot.org/uniprot/O69174 O69174]
 
 
</div>
 
</div>
−
{{#set: common-name=enolase|phosphopyruvate hydratase}}
+
{{#set: common-name=glycine&mdash;trna ligase|glycine-trna ligase}}
−
{{#set: ec-number=ec-4.2.1.11}}
+
{{#set: ec-number=ec-6.1.1.14}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=13}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=20}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction GLYCINE--TRNA-LIGASE-RXN

  • common-name:
    • glycine-trna ligase
    • glycine—trna ligase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=GLYCINE--TRNA-LIGASE-RXN&oldid=52197"