Difference between revisions of "THYMIDYLATESYN-RXN"

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(Created page with "Category:reaction == Reaction SPONTPRO-RXN == * direction: ** reversible == Reaction formula == * 1 L-DELTA1-PYRROLINE_5-CARBOXYLATE[c] '''+''' 1 PROTON[c] '''+'''...")
(Created page with "Category:reaction == Reaction THYMIDYLATESYN-RXN == * common-name: ** thymidylate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.45 ec-2.1.1.45] * direction:...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SPONTPRO-RXN ==
+
== Reaction THYMIDYLATESYN-RXN ==
 +
* common-name:
 +
** thymidylate synthase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.1.1.45 ec-2.1.1.45]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
+
* 1 [[DUMP]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[DIHYDROFOLATE-GLU-N]][c] '''+''' 1 [[TMP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[E_subulatus_14834]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-3841]], folate transformations II (plants):
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine):
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
** '''4''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
−
* [[PWY-7770]], indolmycin biosynthesis:
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
** '''1''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
−
* [[PWY-6853]], ethene biosynthesis II (microbes):
+
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
 
** '''2''' reactions found over '''5''' reactions in the full pathway
 
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
+
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PROSYN-PWY]], L-proline biosynthesis I (from L-glutamate):
+
* [[1CMET2-PWY]], folate transformations III (E. coli):
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
+
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6344]], L-arginine degradation XIV (oxidative Stickland reaction):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-3341]], L-proline biosynthesis III (from L-ornithine):
 
−
** '''5''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PROUT-PWY]], L-proline degradation I:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
+
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR99897
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR123914
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28237 28237]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12105 12105]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03314 R03314]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/P19368 P19368]
−
{{#set: nb pathway associated=10}}
+
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
−
{{#set: reconstruction category=manual}}
+
** [http://www.uniprot.org/uniprot/P47469 P47469]
−
{{#set: reconstruction tool=curation}}
+
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
−
{{#set: reconstruction comment=annotation}}
+
** [http://www.uniprot.org/uniprot/P42326 P42326]
−
{{#set: reconstruction source=esub_adding_annot_form}}
+
** [http://www.uniprot.org/uniprot/O02604 O02604]
 +
** [http://www.uniprot.org/uniprot/P07382 P07382]
 +
** [http://www.uniprot.org/uniprot/P16126 P16126]
 +
** [http://www.uniprot.org/uniprot/P13922 P13922]
 +
** [http://www.uniprot.org/uniprot/P20712 P20712]
 +
** [http://www.uniprot.org/uniprot/P11044 P11044]
 +
** [http://www.uniprot.org/uniprot/P45350 P45350]
 +
** [http://www.uniprot.org/uniprot/P45352 P45352]
 +
** [http://www.uniprot.org/uniprot/P51820 P51820]
 +
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
 +
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
 +
** [http://www.uniprot.org/uniprot/P09249 P09249]
 +
** [http://www.uniprot.org/uniprot/P12462 P12462]
 +
** [http://www.uniprot.org/uniprot/P07606 P07606]
 +
** [http://www.uniprot.org/uniprot/P00471 P00471]
 +
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
 +
** [http://www.uniprot.org/uniprot/P00469 P00469]
 +
** [http://www.uniprot.org/uniprot/O81395 O81395]
 +
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
 +
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
 +
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
 +
** [http://www.uniprot.org/uniprot/P06785 P06785]
 +
** [http://www.uniprot.org/uniprot/P04818 P04818]
 +
** [http://www.uniprot.org/uniprot/P07607 P07607]
 +
** [http://www.uniprot.org/uniprot/P13100 P13100]
 +
</div>
 +
{{#set: common-name=thymidylate synthase}}
 +
{{#set: ec-number=ec-2.1.1.45}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=8}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:41, 17 March 2021

Reaction THYMIDYLATESYN-RXN

  • common-name:
    • thymidylate synthase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3841, folate transformations II (plants):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7199, pyrimidine deoxyribonucleosides salvage:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV:
    • 6 reactions found over 7 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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