Difference between revisions of "1.1.1.39-RXN"

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(Created page with "Category:reaction == Reaction MANNPISOM-RXN == * common-name: ** mannose-6-phosphate isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1.8 ec-5.3.1.8] * direction...")
(Created page with "Category:reaction == Reaction 1.1.1.39-RXN == * common-name: ** malate dehydrogenase, nad-requiring * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38] * di...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MANNPISOM-RXN ==
+
== Reaction 1.1.1.39-RXN ==
 
* common-name:
 
* common-name:
−
** mannose-6-phosphate isomerase
+
** malate dehydrogenase, nad-requiring
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.8 ec-5.3.1.8]
+
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-15979]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c]
+
* 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_23246]]
−
* Gene: [[E_subulatus_24832]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_23247]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_17116]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_20089]]
+
* Gene: [[E_subulatus_23250]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_23248]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_20087]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_23249]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_17115]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_24833]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-882]], L-ascorbate biosynthesis I (plants, L-galactose pathway):
+
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-3861]], mannitol degradation II:
+
* [[PWY-7686]], L-malate degradation II:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[MANNCAT-PWY]], D-mannose degradation I:
+
* [[PWY-3641]], L-carnitine degradation III:
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5659]], GDP-mannose biosynthesis:
+
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7118]], chitin deacetylation:
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-3881]], mannitol biosynthesis:
+
* [[GLUCONEO-PWY]], gluconeogenesis I:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''13''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6992]], 1,5-anhydrofructose degradation:
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7586]], &beta;-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7456]], &beta;-(1,4)-mannan degradation:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR101382
+
* METANETX-RXN : MNXR101446
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12359 12359]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 +
** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
 +
** [http://www.uniprot.org/uniprot/O59029 O59029]
 +
** [http://www.uniprot.org/uniprot/P16468 P16468]
 +
** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
 +
** [http://www.uniprot.org/uniprot/P26616 P26616]
 +
** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
 +
** [http://www.uniprot.org/uniprot/P37224 P37224]
 +
** [http://www.uniprot.org/uniprot/P37225 P37225]
 +
** [http://www.uniprot.org/uniprot/P37221 P37221]
 +
** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
 +
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00772 R00772]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
−
* UNIPROT:
+
{{#set: common-name=malate dehydrogenase, nad-requiring}}
−
** [http://www.uniprot.org/uniprot/P07874 P07874]
+
{{#set: ec-number=ec-1.1.1.38}}
−
** [http://www.uniprot.org/uniprot/P29951 P29951]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P39841 P39841]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/P00946 P00946]
+
{{#set: nb pathway associated=6}}
−
** [http://www.uniprot.org/uniprot/P25081 P25081]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q52206 Q52206]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P34949 P34949]
 
−
** [http://www.uniprot.org/uniprot/P29952 P29952]
 
−
** [http://www.uniprot.org/uniprot/P34948 P34948]
 
−
** [http://www.uniprot.org/uniprot/Q55183 Q55183]
 
−
** [http://www.uniprot.org/uniprot/P73377 P73377]
 
−
{{#set: common-name=mannose-6-phosphate isomerase}}
 
−
{{#set: ec-number=ec-5.3.1.8}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=6}}
 
−
{{#set: nb pathway associated=8}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction 1.1.1.39-RXN

  • common-name:
    • malate dehydrogenase, nad-requiring
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7686, L-malate degradation II:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-3641, L-carnitine degradation III:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial):
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-7118, chitin deacetylation:
    • 4 reactions found over 4 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 13 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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