Difference between revisions of "1.2.1.2-RXN"

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(Created page with "Category:reaction == Reaction PGLYCDEHYDROG-RXN == * common-name: ** d-3-phosphoglycerate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95]...")
(Created page with "Category:reaction == Reaction 1.2.1.2-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.17.1.9 ec-1.17.1.9] * direction: ** reversible == Reaction formula == * 1 FOR...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PGLYCDEHYDROG-RXN ==
+
== Reaction 1.2.1.2-RXN ==
−
* common-name:
 
−
** d-3-phosphoglycerate dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95]
+
** [http://enzyme.expasy.org/EC/1.17.1.9 ec-1.17.1.9]
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[FORMATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_01138]]
+
* Gene: [[E_subulatus_19981]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_19983]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_19982]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[SERSYN-PWY]], L-serine biosynthesis I:
+
* [[PWY-7985]], oxalate degradation VI:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-8010]], L-cysteine biosynthesis IX (Trichomonas vaginalis):
+
* [[PWY-6696]], oxalate degradation III:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 +
** '''6''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-1881]], formate oxidation to CO2:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR102527
+
* METANETX-RXN : MNXR99475
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12644 12644]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15988 15988]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00519 R00519]
−
* UNIPROT:
+
{{#set: ec-number=ec-1.17.1.9}}
−
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
 
−
** [http://www.uniprot.org/uniprot/P43885 P43885]
 
−
** [http://www.uniprot.org/uniprot/P35136 P35136]
 
−
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
 
−
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
 
−
** [http://www.uniprot.org/uniprot/P40510 P40510]
 
−
** [http://www.uniprot.org/uniprot/P40054 P40054]
 
−
** [http://www.uniprot.org/uniprot/O49485 O49485]
 
−
** [http://www.uniprot.org/uniprot/P87228 P87228]
 
−
** [http://www.uniprot.org/uniprot/O04130 O04130]
 
−
{{#set: common-name=d-3-phosphoglycerate dehydrogenase}}
 
−
{{#set: ec-number=ec-1.1.1.95}}
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}

Latest revision as of 19:41, 17 March 2021

Reaction 1.2.1.2-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7985, oxalate degradation VI:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6696, oxalate degradation III:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic):
    • 6 reactions found over 15 reactions in the full pathway
  • PWY-1881, formate oxidation to CO2:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR99475
  • RHEA:
  • LIGAND-RXN:





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