Difference between revisions of "FUMHYDR-RXN"

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(Created page with "Category:reaction == Reaction RXN-16635 == * common-name: ** galactolipid galactosyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.184 ec-2.4.1.184] * dire...")
(Created page with "Category:reaction == Reaction FUMHYDR-RXN == * common-name: ** fumarase c * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.2 ec-4.2.1.2] * direction: ** reversible * syn...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16635 ==
+
== Reaction FUMHYDR-RXN ==
 
* common-name:
 
* common-name:
−
** galactolipid galactosyltransferase
+
** fumarase c
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.1.184 ec-2.4.1.184]
+
** [http://enzyme.expasy.org/EC/4.2.1.2 ec-4.2.1.2]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* synonymous:
 +
** malate dehydration
 +
** fumarate hydration
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-10364]][c] '''+''' 1 [[D-Galactosyl-12-diacyl-glycerols]][c] '''=>''' 1 [[DIACYLGLYCEROL]][c] '''+''' 1 [[Tetragalactosyldiacylglycerol]][c]
+
* 1 [[MAL]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_14958]]
−
* Gene: [[E_subulatus_18292]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_09152]]
+
* Gene: [[E_subulatus_14960]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_01839]]
+
* Gene: [[E_subulatus_03391]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_18293]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_14959]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_01840]]
+
== Pathway(s)  ==
−
** Category: [[annotation]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
−
* Gene: [[E_subulatus_14738]]
+
** '''8''' reactions found over '''10''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[FERMENTATION-PWY]], mixed acid fermentation:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''10''' reactions found over '''16''' reactions in the full pathway
−
* Gene: [[E_subulatus_09153]]
+
* [[PWY-6728]], methylaspartate cycle:
−
** Category: [[annotation]]
+
** '''12''' reactions found over '''19''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation:
−
* Gene: [[E_subulatus_14739]]
+
** '''6''' reactions found over '''4''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[P42-PWY]], incomplete reductive TCA cycle:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* Gene: [[E_subulatus_10302]]
+
* [[PWY-5392]], reductive TCA cycle II:
−
** Category: [[annotation]]
+
** '''5''' reactions found over '''12''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[P23-PWY]], reductive TCA cycle I:
−
* Gene: [[E_subulatus_17738]]
+
** '''9''' reactions found over '''12''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[P108-PWY]], pyruvate fermentation to propanoate I:
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s)  ==
 
−
* [[PWY-401]], galactolipid biosynthesis I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR120254
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=galactolipid galactosyltransferase}}
+
* METANETX-RXN : MNXR99705
−
{{#set: ec-number=ec-2.4.1.184}}
+
* RHEA:
−
{{#set: direction=left-to-right}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12463 12463]
−
{{#set: nb gene associated=10}}
+
* PIR:
−
{{#set: nb pathway associated=1}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47692 A47692]
−
{{#set: reconstruction category=annotation}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49760 A49760]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64377 A64377]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81281 A81281]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81807 A81807]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B44511 B44511]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81862 B81862]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64461 E64461]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64685 E64685]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70896 H70896]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H71462 H71462]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4293 JC4293]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4982 JC4982]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0062 PA0062]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40448 S40448]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76348 S76348]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T00433 T00433]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07374 T07374]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41265 T41265]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T43727 T43727]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45269 T45269]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBSC8 UFBSC8]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBYM UFBYM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFEC UFEC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFECAQ UFECAQ]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFHUM UFHUM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFPG UFPG]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFRT UFRT]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q04718 Q04718]
 +
** [http://www.uniprot.org/uniprot/Q58034 Q58034]
 +
** [http://www.uniprot.org/uniprot/O69294 O69294]
 +
** [http://www.uniprot.org/uniprot/Q9JTE3 Q9JTE3]
 +
** [http://www.uniprot.org/uniprot/P14407 P14407]
 +
** [http://www.uniprot.org/uniprot/Q9JTR0 Q9JTR0]
 +
** [http://www.uniprot.org/uniprot/Q58690 Q58690]
 +
** [http://www.uniprot.org/uniprot/O25883 O25883]
 +
** [http://www.uniprot.org/uniprot/O53446 O53446]
 +
** [http://www.uniprot.org/uniprot/O84863 O84863]
 +
** [http://www.uniprot.org/uniprot/Q51404 Q51404]
 +
** [http://www.uniprot.org/uniprot/Q7M4Z3 Q7M4Z3]
 +
** [http://www.uniprot.org/uniprot/P39461 P39461]
 +
** [http://www.uniprot.org/uniprot/Q55674 Q55674]
 +
** [http://www.uniprot.org/uniprot/P93033 P93033]
 +
** [http://www.uniprot.org/uniprot/Q43180 Q43180]
 +
** [http://www.uniprot.org/uniprot/O94552 O94552]
 +
** [http://www.uniprot.org/uniprot/O66271 O66271]
 +
** [http://www.uniprot.org/uniprot/Q60022 Q60022]
 +
** [http://www.uniprot.org/uniprot/P07343 P07343]
 +
** [http://www.uniprot.org/uniprot/P08417 P08417]
 +
** [http://www.uniprot.org/uniprot/P05042 P05042]
 +
** [http://www.uniprot.org/uniprot/P0AC33 P0AC33]
 +
** [http://www.uniprot.org/uniprot/P10173 P10173]
 +
** [http://www.uniprot.org/uniprot/P14408 P14408]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01082 R01082]
 +
</div>
 +
{{#set: common-name=fumarase c}}
 +
{{#set: ec-number=ec-4.2.1.2}}
 +
{{#set: direction=reversible}}
 +
{{#set: synonymous=malate dehydration|fumarate hydration}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=16}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction FUMHYDR-RXN

  • common-name:
    • fumarase c
  • ec-number:
  • direction:
    • reversible
  • synonymous:
    • malate dehydration
    • fumarate hydration

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial):
    • 8 reactions found over 10 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 10 reactions found over 16 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 12 reactions found over 19 reactions in the full pathway
  • PWY-561, superpathway of glyoxylate cycle and fatty acid degradation:
    • 6 reactions found over 4 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 5 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • P108-PWY, pyruvate fermentation to propanoate I:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 8 reactions in the full pathway
  • REDCITCYC, TCA cycle VI (Helicobacter):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate synthase):
    • 10 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 9 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=FUMHYDR-RXN&oldid=50911"