Difference between revisions of "RXN0-882"

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(Created page with "Category:reaction == Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN == * common-name: ** succinate-coa ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.4 ec-6.2.1...")
(Created page with "Category:reaction == Reaction RXN0-882 == * common-name: ** 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.7.1 ec-1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN ==
+
== Reaction RXN0-882 ==
 
* common-name:
 
* common-name:
−
** succinate-coa ligase
+
** 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.4 ec-6.2.1.4]
+
** [http://enzyme.expasy.org/EC/1.17.7.1 ec-1.17.7.1]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
* 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_02431]]
+
* Gene: [[E_subulatus_11846]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_12371]]
+
* Gene: [[E_subulatus_16043]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02430]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_00867]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-398]], TCA cycle III (animals):
+
* [[PWY-7560]], methylerythritol phosphate pathway II:
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR104637
+
* METANETX-RXN : MNXR112205
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22123 22123]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26121 26121]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00432 R00432]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08689 R08689]
−
* UNIPROT:
+
{{#set: common-name=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase}}
−
** [http://www.uniprot.org/uniprot/Q03184 Q03184]
+
{{#set: ec-number=ec-1.17.7.1}}
−
** [http://www.uniprot.org/uniprot/O08371 O08371]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/O84829 O84829]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/Q8LAD2 Q8LAD2]
 
−
** [http://www.uniprot.org/uniprot/P53587 P53587]
 
−
** [http://www.uniprot.org/uniprot/P53312 P53312]
 
−
** [http://www.uniprot.org/uniprot/P36967 P36967]
 
−
** [http://www.uniprot.org/uniprot/P13086 P13086]
 
−
** [http://www.uniprot.org/uniprot/Q9Y436 Q9Y436]
 
−
** [http://www.uniprot.org/uniprot/P68209 P68209]
 
−
{{#set: common-name=succinate-coa ligase}}
 
−
{{#set: ec-number=ec-6.2.1.4}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=4}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Latest revision as of 19:39, 17 March 2021

Reaction RXN0-882

  • common-name:
    • 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7560, methylerythritol phosphate pathway II:
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR112205
  • RHEA:
  • LIGAND-RXN:





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