Difference between revisions of "FISUC RS00115"

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(Created page with "Category:reaction == Reaction THYKI-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.145 ec-2.7.1.145] ** [http://enzyme.expasy.org/EC/2.7.1.21 ec-2.7.1.21] * dir...")
(Created page with "Category:reaction == Reaction SHIKIMATE-KINASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.71 ec-2.7.1.71] * direction: ** left-to-right == Reaction formula...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THYKI-RXN ==
+
== Reaction SHIKIMATE-KINASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.145 ec-2.7.1.145]
+
** [http://enzyme.expasy.org/EC/2.7.1.71 ec-2.7.1.71]
−
** [http://enzyme.expasy.org/EC/2.7.1.21 ec-2.7.1.21]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** deoxynucleoside kinase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[THYMIDINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TMP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[SHIKIMATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SHIKIMATE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS12230]]
+
* Gene: [[FSU_RS13250]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS14200]]
+
* Gene: [[FSU_RS13245]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage:
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19130 19130]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13124 13124]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01567 R01567]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09768 P09768]
+
** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7]
−
** [http://www.uniprot.org/uniprot/P27158 P27158]
+
** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5]
−
** [http://www.uniprot.org/uniprot/P36226 P36226]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
** [http://www.uniprot.org/uniprot/O36371 O36371]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
** [http://www.uniprot.org/uniprot/Q86548 Q86548]
+
** [http://www.uniprot.org/uniprot/P43880 P43880]
−
** [http://www.uniprot.org/uniprot/P23983 P23983]
+
** [http://www.uniprot.org/uniprot/P63600 P63600]
−
** [http://www.uniprot.org/uniprot/P44309 P44309]
+
** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1]
−
** [http://www.uniprot.org/uniprot/P47280 P47280]
+
** [http://www.uniprot.org/uniprot/P37944 P37944]
−
** [http://www.uniprot.org/uniprot/Q05879 Q05879]
+
** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1]
−
** [http://www.uniprot.org/uniprot/Q05880 Q05880]
+
** [http://www.uniprot.org/uniprot/P10880 P10880]
−
** [http://www.uniprot.org/uniprot/P23331 P23331]
+
** [http://www.uniprot.org/uniprot/Q00497 Q00497]
−
** [http://www.uniprot.org/uniprot/P06479 P06479]
+
** [http://www.uniprot.org/uniprot/P34003 P34003]
−
** [http://www.uniprot.org/uniprot/P09250 P09250]
+
** [http://www.uniprot.org/uniprot/P43906 P43906]
−
** [http://www.uniprot.org/uniprot/P14342 P14342]
+
** [http://www.uniprot.org/uniprot/P72796 P72796]
−
** [http://www.uniprot.org/uniprot/P22649 P22649]
+
{{#set: ec-number=ec-2.7.1.71}}
−
** [http://www.uniprot.org/uniprot/P24096 P24096]
 
−
** [http://www.uniprot.org/uniprot/P24424 P24424]
 
−
** [http://www.uniprot.org/uniprot/P69185 P69185]
 
−
** [http://www.uniprot.org/uniprot/P69186 P69186]
 
−
** [http://www.uniprot.org/uniprot/P24425 P24425]
 
−
** [http://www.uniprot.org/uniprot/P0C0E7 P0C0E7]
 
−
** [http://www.uniprot.org/uniprot/P0C0E6 P0C0E6]
 
−
** [http://www.uniprot.org/uniprot/P0C0E5 P0C0E5]
 
−
** [http://www.uniprot.org/uniprot/P13159 P13159]
 
−
** [http://www.uniprot.org/uniprot/P14343 P14343]
 
−
** [http://www.uniprot.org/uniprot/P08333 P08333]
 
−
** [http://www.uniprot.org/uniprot/P28855 P28855]
 
−
** [http://www.uniprot.org/uniprot/P17402 P17402]
 
−
** [http://www.uniprot.org/uniprot/P17653 P17653]
 
−
** [http://www.uniprot.org/uniprot/P06478 P06478]
 
−
** [http://www.uniprot.org/uniprot/P03177 P03177]
 
−
** [http://www.uniprot.org/uniprot/P04408 P04408]
 
−
** [http://www.uniprot.org/uniprot/P13300 P13300]
 
−
** [http://www.uniprot.org/uniprot/P04047 P04047]
 
−
** [http://www.uniprot.org/uniprot/P04183 P04183]
 
−
** [http://www.uniprot.org/uniprot/P04184 P04184]
 
−
** [http://www.uniprot.org/uniprot/P68563 P68563]
 
−
** [http://www.uniprot.org/uniprot/P68564 P68564]
 
−
** [http://www.uniprot.org/uniprot/P28852 P28852]
 
−
** [http://www.uniprot.org/uniprot/P16600 P16600]
 
−
** [http://www.uniprot.org/uniprot/P10052 P10052]
 
−
** [http://www.uniprot.org/uniprot/P28851 P28851]
 
−
** [http://www.uniprot.org/uniprot/P04363 P04363]
 
−
** [http://www.uniprot.org/uniprot/P07605 P07605]
 
−
** [http://www.uniprot.org/uniprot/Q8V3N1 Q8V3N1]
 
−
** [http://www.uniprot.org/uniprot/P23335 P23335]
 
−
** [http://www.uniprot.org/uniprot/P04364 P04364]
 
−
** [http://www.uniprot.org/uniprot/P18555 P18555]
 
−
** [http://www.uniprot.org/uniprot/P22176 P22176]
 
−
** [http://www.uniprot.org/uniprot/Q66596 Q66596]
 
−
** [http://www.uniprot.org/uniprot/Q03221 Q03221]
 
−
** [http://www.uniprot.org/uniprot/Q66624 Q66624]
 
−
** [http://www.uniprot.org/uniprot/P75070 P75070]
 
−
** [http://www.uniprot.org/uniprot/O81263 O81263]
 
−
** [http://www.uniprot.org/uniprot/O55749 O55749]
 
−
** [http://www.uniprot.org/uniprot/O39280 O39280]
 
−
** [http://www.uniprot.org/uniprot/Q9YTP5 Q9YTP5]
 
−
** [http://www.uniprot.org/uniprot/Q9ZIG2 Q9ZIG2]
 
−
</div>
 
−
{{#set: ec-number=ec-2.7.1.21|ec-2.7.1.145}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=deoxynucleoside kinase}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=faecalibacterium|bifidobacterium}}

Revision as of 10:09, 10 September 2020

Reaction SHIKIMATE-KINASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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