Difference between revisions of "FISUC RS12860"

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(Created page with "Category:reaction == Reaction RIBOFLAVINSYNDEAM-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.26 ec-3.5.4.26] * direction: ** left-to-right * common-name: ** b...")
(Created page with "Category:reaction == Reaction RXN-13697 == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.1 ec-2.6.1.1] * direction: ** reversible == Reaction formula == * 1 2-KETOG...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RIBOFLAVINSYNDEAM-RXN ==
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== Reaction RXN-13697 ==
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.5.4.26 ec-3.5.4.26]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 ec-2.6.1.1]
 
* direction:
 
* direction:
** left-to-right
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** reversible
* common-name:
 
** bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FISUC_RS13730]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[FSU_RS15705]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
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* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
** '''9''' reactions found over '''9''' reactions in the full pathway
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** '''8''' reactions found over '''10''' reactions in the full pathway
* [[PWY-7991]], toxoflavin biosynthesis:
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* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
** '''4''' reactions found over '''7''' reactions in the full pathway
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** '''7''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: ec-number=ec-2.6.1.1}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21869 21869]
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{{#set: direction=reversible}}
* LIGAND-RXN:
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{{#set: nb gene associated=0}}
** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
 
{{#set: ec-number=ec-3.5.4.26}}
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd}}
 
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gap-filling}}
{{#set: reconstruction source=bifidobacterium|ecoli|genome}}
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{{#set: reconstruction source=reactions_add_gp}}

Revision as of 10:10, 10 September 2020

Reaction RXN-13697

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 7 reactions found over 12 reactions in the full pathway

Reconstruction information

External links