Difference between revisions of "FISUC RS15070"

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(Created page with "Category:reaction == Reaction RXN-11319 == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.99.19 ec-4.1.99.19] * direction: ** left-to-right * common-name: ** 2-iminoacet...")
(Created page with "Category:reaction == Reaction RXN-9537 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] ** [http...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11319 ==
+
== Reaction RXN-9537 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.99.19 ec-4.1.99.19]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-iminoacetate synthase thih
+
** 3-hydroxyacyl-acp dehydratase fabz
 +
* synonymous:
 +
** (3r)-hydroxymyristoyl-acp dehydratase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADPH]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[TYR]][c] '''=>''' 1 [[CH33ADO]][c] '''+''' 1 [[CPD-108]][c] '''+''' 1 [[CPD-12279]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS00830]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FISUC_RS14115]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS14640]]
+
* Gene: [[FSU_RS00310]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS00825]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS00290]]
 +
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS01730]]
 +
** Category: [[orthology]]
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS01735]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria):
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''20''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
 +
** '''22''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.3.1.85|ec-4.2.1.59|ec-2.3.1.86}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R10246 R10246]
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26364 26364]
 
−
{{#set: ec-number=ec-4.1.99.19}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-iminoacetate synthase thih}}
+
{{#set: common-name=3-hydroxyacyl-acp dehydratase fabz}}
−
{{#set: nb gene associated=3}}
+
{{#set: synonymous=(3r)-hydroxymyristoyl-acp dehydratase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|genome}}
+
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|genome|ecoli|faecalibacterium|plantarum}}

Revision as of 10:11, 10 September 2020

Reaction RXN-9537

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • 3-hydroxyacyl-acp dehydratase fabz
  • synonymous:
    • (3r)-hydroxymyristoyl-acp dehydratase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5994, palmitate biosynthesis I (animals and fungi):
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis II (bacteria and plants):
    • 22 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15070&oldid=23100"