Difference between revisions of "FSU RS13560"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2] * direction: ** left-to-right == Reaction for...")
(Created page with "Category:reaction == Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.132 ec-1.1.1.132] * direction: ** left-to-right == Reac...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
+
== Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
+
** [http://enzyme.expasy.org/EC/1.1.1.132 ec-1.1.1.132]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[GDP-MANNOSE]][c] '''+''' 2 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1828]][c] '''+''' 2 [[NADH]][c] '''+''' 3 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS00325]]
+
* Gene: [[FSU_RS06690]]
−
** Category: [[orthology]]
+
** Category: [[manual]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5022]], 4-aminobutanoate degradation V:
+
* [[PWY-6073]], alginate biosynthesis I (algal):
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6082]], alginate biosynthesis II (bacterial):
 
** '''1''' reactions found over '''7''' reactions in the full pathway
 
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7126]], ethylene biosynthesis IV (engineered):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 
−
** '''1''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''9''' reactions found over '''19''' reactions in the full pathway
 
−
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21731 21731]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00880 R00880]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P20016 P20016]
+
** [http://www.uniprot.org/uniprot/P11759 P11759]
−
** [http://www.uniprot.org/uniprot/P28997 P28997]
+
{{#set: ec-number=ec-1.1.1.132}}
−
** [http://www.uniprot.org/uniprot/P41755 P41755]
 
−
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
 
−
** [http://www.uniprot.org/uniprot/P00365 P00365]
 
−
** [http://www.uniprot.org/uniprot/P93541 P93541]
 
−
** [http://www.uniprot.org/uniprot/P80319 P80319]
 
−
** [http://www.uniprot.org/uniprot/P24295 P24295]
 
−
** [http://www.uniprot.org/uniprot/P27346 P27346]
 
−
** [http://www.uniprot.org/uniprot/P33327 P33327]
 
−
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
 
−
** [http://www.uniprot.org/uniprot/O04937 O04937]
 
−
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
 
−
** [http://www.uniprot.org/uniprot/O74024 O74024]
 
−
** [http://www.uniprot.org/uniprot/O59650 O59650]
 
−
</div>
 
−
{{#set: ec-number=ec-1.4.1.2}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
−
{{#set: reconstruction source=bthetaiotaomicron}}
+
{{#set: reconstruction source=reactions_add_147_emile_annot}}

Revision as of 10:14, 10 September 2020

Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6073, alginate biosynthesis I (algal):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6082, alginate biosynthesis II (bacterial):
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13560&oldid=23735"