Difference between revisions of "FISUC RS12545"

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(Created page with "Category:reaction == Reaction O-SUCCINYLBENZOATE-COA-SYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.113 ec-4.2.1.113] * direction: ** left-to-right == React...")
(Created page with "Category:reaction == Reaction DTDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction O-SUCCINYLBENZOATE-COA-SYN-RXN ==
+
== Reaction DTDPKIN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.113 ec-4.2.1.113]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** nucleoside-diphosphate kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-9923]][c] '''=>''' 1 [[O-SUCCINYLBENZOATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS14500]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS12530]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS15240]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5837]], 2-carboxy-1,4-naphthoquinol biosynthesis:
+
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_gp2]]; tool: [[curation]]; comment: added for gap-filling
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10197 10197]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27683 27683]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04031 R04031]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
−
{{#set: ec-number=ec-4.2.1.113}}
+
{{#set: ec-number=ec-2.7.4.6}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=nucleoside-diphosphate kinase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gap-filling}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
−
{{#set: reconstruction source=reactions_add_gp2}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=genome|plantarum|bthetaiotaomicron|ecoli}}

Revision as of 10:14, 10 September 2020

Reaction DTDPKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • nucleoside-diphosphate kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV:
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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