Difference between revisions of "FSU RS09970"

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(Created page with "Category:reaction == Reaction PPPGPPHYDRO-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.40 ec-3.6.1.40] * direction: ** left-to-right == Reaction formula == *...")
 
(Created page with "Category:reaction == Reaction 2-METHYLCITRATE-DEHYDRATASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.79 ec-4.2.1.79] * direction: ** reversible == Reaction...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction PPPGPPHYDRO-RXN ==
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== Reaction 2-METHYLCITRATE-DEHYDRATASE-RXN ==
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.6.1.40 ec-3.6.1.40]
+
** [http://enzyme.expasy.org/EC/4.2.1.79 ec-4.2.1.79]
 
* direction:
 
* direction:
** left-to-right
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** reversible
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[GDP-TP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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* 1 [[CPD-622]][c] '''<=>''' 1 [[CPD-1136]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FISUC_RS10935]]
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* Gene: [[FSU_RS15360]]
** Category: [[orthology]]
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** Category: [[manual]]
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
* Gene: [[FSU_RS16335]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
* Gene: [[FSU_RS12900]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PPGPPMET-PWY]], ppGpp biosynthesis:
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* [[PWY0-42]], 2-methylcitrate cycle I:
** '''6''' reactions found over '''6''' reactions in the full pathway
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13074 13074]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17728 17728]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R03409 R03409]
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** [http://www.genome.jp/dbget-bin/www_bget?R04424 R04424]
{{#set: ec-number=ec-3.6.1.40}}
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{{#set: ec-number=ec-4.2.1.79}}
{{#set: direction=left-to-right}}
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{{#set: direction=reversible}}
{{#set: nb gene associated=3}}
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{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
{{#set: reconstruction source=bifidobacterium|ecoli|bthetaiotaomicron}}
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{{#set: reconstruction source=reactions_add_147_emile_annot}}

Revision as of 10:15, 10 September 2020

Reaction 2-METHYLCITRATE-DEHYDRATASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-42, 2-methylcitrate cycle I:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links