Difference between revisions of "FSU RS06250"

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(Created page with "Category:reaction == Reaction RXN0-2382 == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction RXN0-6482 == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.56 ec-2.7.7.56] * direction: ** left-to-right * common-name: ** ribonuclease...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-2382 ==
+
== Reaction RXN0-6482 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
+
** [http://enzyme.expasy.org/EC/2.7.7.56 ec-2.7.7.56]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** ribonuclease ph
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CPD0-2353]][c] '''+''' n [[Pi]][c] '''=>''' n [[Ribonucleoside-Diphosphates]][c] '''+''' 1 [[tRNAs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[FSU_RS05020]]
−
* Gene: [[FISUC_RS00915]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS00910]]
+
* Gene: [[FISUC_RS03130]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS02790]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS02795]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
+
* [[PWY0-1479]], tRNA processing:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: ec-number=ec-2.7.7.56}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
 
−
{{#set: ec-number=ec-4.2.1.122}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=4}}
+
{{#set: common-name=ribonuclease ph}}
 +
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|genome|bifidobacterium|bthetaiotaomicron}}
+
{{#set: reconstruction source=genome}}

Revision as of 17:56, 22 September 2020

Reaction RXN0-6482

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • ribonuclease ph

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1479, tRNA processing:
    • 5 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS06250&oldid=29119"