Difference between revisions of "FISUC RS12165"

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(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10] * direction: ** reversible * common-na...")
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2] * direction: ** left-to-right == Reaction for...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN ==
+
== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10]
+
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** type i 3-dehydroquinate dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS09810]]
+
* Gene: [[FSU_RS00325]]
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS07880]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6416]], quinate degradation II:
+
* [[PWY-5022]], 4-aminobutanoate degradation V:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* [[QUINATEDEG-PWY]], quinate degradation I:
+
* [[PWY-7126]], ethylene biosynthesis IV (engineered):
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6707]], gallate biosynthesis:
+
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
+
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05195 P05195]
+
** [http://www.uniprot.org/uniprot/P20016 P20016]
−
** [http://www.uniprot.org/uniprot/P46380 P46380]
+
** [http://www.uniprot.org/uniprot/P28997 P28997]
−
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
+
** [http://www.uniprot.org/uniprot/P41755 P41755]
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
** [http://www.uniprot.org/uniprot/P00365 P00365]
−
** [http://www.uniprot.org/uniprot/P43878 P43878]
+
** [http://www.uniprot.org/uniprot/P93541 P93541]
−
** [http://www.uniprot.org/uniprot/P05194 P05194]
+
** [http://www.uniprot.org/uniprot/P80319 P80319]
−
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
+
** [http://www.uniprot.org/uniprot/P24295 P24295]
−
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
+
** [http://www.uniprot.org/uniprot/P27346 P27346]
−
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
+
** [http://www.uniprot.org/uniprot/P33327 P33327]
−
** [http://www.uniprot.org/uniprot/P05147 P05147]
+
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
−
** [http://www.uniprot.org/uniprot/P24670 P24670]
+
** [http://www.uniprot.org/uniprot/O04937 O04937]
−
** [http://www.uniprot.org/uniprot/P35146 P35146]
+
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
−
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
+
** [http://www.uniprot.org/uniprot/O74024 O74024]
−
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
+
** [http://www.uniprot.org/uniprot/O59650 O59650]
−
** [http://www.uniprot.org/uniprot/P73367 P73367]
 
−
** [http://www.uniprot.org/uniprot/O65917 O65917]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-4.2.1.10}}
+
{{#set: ec-number=ec-1.4.1.2}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=type i 3-dehydroquinate dehydratase}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=6}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome|plantarum|ecoli}}
+
{{#set: reconstruction source=bthetaiotaomicron}}

Revision as of 17:56, 22 September 2020

Reaction GLUTAMATE-DEHYDROGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5022, 4-aminobutanoate degradation V:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered):
    • 1 reactions found over 3 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 1 reactions found over 11 reactions in the full pathway
  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 9 reactions found over 19 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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