Difference between revisions of "FSU RS02780"

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(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.6 ec-2.6.1.6] ** [http://enzyme.expasy.org/EC/2.6.1....")
(Created page with "Category:reaction == Reaction TransportSeed-CPD0-2433 == * direction: ** left-to-right == Reaction formula == * 1.0 CPD0-2433[e] '''=>''' 1.0 CPD0-2433[c] == Gene(...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN ==
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== Reaction TransportSeed-CPD0-2433 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.6.1.6 ec-2.6.1.6]
 
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** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
 
 
* direction:
 
* direction:
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** reversible
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** left-to-right
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* common-name:
 
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** branched-chain amino acid aminotransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[LEU]][c] '''<=>''' 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[GLT]][c]
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* 1.0 [[CPD0-2433]][e] '''=>''' 1.0 [[CPD0-2433]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FISUC_RS03245]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS05135]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[LEU-DEG2-PWY]], L-leucine degradation I:
 
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** '''1''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-5076]], L-leucine degradation III:
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-7767]], L-leucine degradation IV (Stickland reaction):
 
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** '''1''' reactions found over '''5''' reactions in the full pathway
 
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* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: direction=left-to-right}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18324 18324]
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{{#set: nb gene associated=0}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01090 R01090]
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{{#set: reconstruction category=manual}}
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* UNIPROT:
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{{#set: reconstruction tool=curation}}
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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{{#set: reconstruction source=import_from_medium}}
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** [http://www.uniprot.org/uniprot/P47176 P47176]
 
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** [http://www.uniprot.org/uniprot/O86505 O86505]
 
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** [http://www.uniprot.org/uniprot/O14370 O14370]
 
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** [http://www.uniprot.org/uniprot/O32954 O32954]
 
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
 
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{{#set: ec-number=ec-2.6.1.6|ec-2.6.1.42}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=branched-chain amino acid aminotransferase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|ecoli|genome|faecalibacterium|plantarum}}
 

Revision as of 17:56, 22 September 2020

Reaction TransportSeed-CPD0-2433

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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