Difference between revisions of "FSU RS11010"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction PYRUVFORMLY-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54] * direction: ** reversible * common-name: ** formate c-...")
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112] * direction: ** left-to-right == Reaction formula ==...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRUVFORMLY-RXN ==
+
== Reaction OXALODECARB-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54]
+
** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** formate c-acetyltransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 1 [[FORMATE]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS05215]]
+
* Gene: [[FSU_RS09880]]
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS07120]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* Gene: [[FSU_RS09935]]
−
* Gene: [[FSU_RS07105]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5485]], pyruvate fermentation to acetate IV:
+
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-5480]], pyruvate fermentation to ethanol I:
+
* [[PWY-6339]], syringate degradation:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5493]], reductive monocarboxylic acid cycle:
+
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 
−
** '''9''' reactions found over '''7''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''14''' reactions found over '''16''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11847 11847]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00212 R00212]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P32674 P32674]
+
** [http://www.uniprot.org/uniprot/P13187 P13187]
−
** [http://www.uniprot.org/uniprot/O26446 O26446]
+
** [http://www.uniprot.org/uniprot/P13155 P13155]
−
** [http://www.uniprot.org/uniprot/P75793 P75793]
+
** [http://www.uniprot.org/uniprot/P13156 P13156]
−
** [http://www.uniprot.org/uniprot/P42632 P42632]
+
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
−
** [http://www.uniprot.org/uniprot/O28823 O28823]
+
{{#set: ec-number=ec-4.1.1.112}}
−
** [http://www.uniprot.org/uniprot/O32797 O32797]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q46266 Q46266]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P09373 P09373]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/P37836 P37836]
+
{{#set: reconstruction category=orthology}}
−
{{#set: ec-number=ec-2.3.1.54}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=formate c-acetyltransferase}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|ecoli|genome|faecalibacterium|plantarum}}
+
{{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron}}

Revision as of 17:57, 22 September 2020

Reaction OXALODECARB-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6339, syringate degradation:
    • 1 reactions found over 9 reactions in the full pathway
  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS11010&oldid=29191"