Difference between revisions of "FISUC RS15070"

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(Created page with "Category:reaction == Reaction RXN-14014 == * ec-number: ** [http://enzyme.expasy.org/EC/1.17.1.8 ec-1.17.1.8] * direction: ** left-to-right * common-name: ** dihydrodipico...")
(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * common-name: ** 3-isopropylmalate dehydratase * direction: ** reversible * synonymous: ** α-isopropylmalate...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14014 ==
+
== Reaction 3-ISOPROPYLMALISOM-RXN ==
−
* ec-number:
+
* common-name:
−
** [http://enzyme.expasy.org/EC/1.17.1.8 ec-1.17.1.8]
+
** 3-isopropylmalate dehydratase
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
+
* synonymous:
−
** dihydrodipicolinate reductase
+
** α-isopropylmalate isomerase
 +
** β-isopropylmalate dehydratase
 +
** 3-isopropylmalate hydro-lyase
 +
** (2r,3s)-3-isopropylmalate hydro-lyase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-14443]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS01195]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FSU_RS02215]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS02210]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS00345]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS15005]]
+
* Gene: [[FISUC_RS00340]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2941]], L-lysine biosynthesis II:
+
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5097]], L-lysine biosynthesis VI:
+
* [[LEUSYN-PWY]], L-leucine biosynthesis:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2942]], L-lysine biosynthesis III:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=35333 35333]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04199 R04199]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
−
** [http://www.genome.jp/dbget-bin/www_bget?R04198 R04198]
+
* UNIPROT:
−
{{#set: ec-number=ec-1.17.1.8}}
+
** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
−
{{#set: common-name=dihydrodipicolinate reductase}}
+
** [http://www.uniprot.org/uniprot/P80858 P80858]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
−
{{#set: nb pathway associated=4}}
+
** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q58673 Q58673]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q02144 Q02144]
 +
** [http://www.uniprot.org/uniprot/P44968 P44968]
 +
** [http://www.uniprot.org/uniprot/Q58667 Q58667]
 +
** [http://www.uniprot.org/uniprot/P44438 P44438]
 +
** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
 +
** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
 +
** [http://www.uniprot.org/uniprot/Q44022 Q44022]
 +
** [http://www.uniprot.org/uniprot/Q44023 Q44023]
 +
** [http://www.uniprot.org/uniprot/Q44427 Q44427]
 +
** [http://www.uniprot.org/uniprot/P17279 P17279]
 +
** [http://www.uniprot.org/uniprot/P04787 P04787]
 +
** [http://www.uniprot.org/uniprot/P15717 P15717]
 +
** [http://www.uniprot.org/uniprot/P18250 P18250]
 +
** [http://www.uniprot.org/uniprot/Q02142 Q02142]
 +
** [http://www.uniprot.org/uniprot/P30126 P30126]
 +
** [http://www.uniprot.org/uniprot/P50181 P50181]
 +
** [http://www.uniprot.org/uniprot/P07264 P07264]
 +
** [http://www.uniprot.org/uniprot/P74207 P74207]
 +
** [http://www.uniprot.org/uniprot/O86534 O86534]
 +
** [http://www.uniprot.org/uniprot/O86535 O86535]
 +
</div>
 +
{{#set: common-name=3-isopropylmalate dehydratase}}
 +
{{#set: direction=reversible}}
 +
{{#set: synonymous=&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron|genome|bifidobacterium}}

Revision as of 07:15, 24 September 2020

Reaction 3-ISOPROPYLMALISOM-RXN

  • common-name:
    • 3-isopropylmalate dehydratase
  • direction:
    • reversible
  • synonymous:
    • α-isopropylmalate isomerase
    • β-isopropylmalate dehydratase
    • 3-isopropylmalate hydro-lyase
    • (2r,3s)-3-isopropylmalate hydro-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6871, 3-methylbutanol biosynthesis (engineered):
    • 6 reactions found over 7 reactions in the full pathway
  • LEUSYN-PWY, L-leucine biosynthesis:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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