Difference between revisions of "FSU RS08165"

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(Created page with "Category:reaction == Reaction RXN-12444 == * ec-number: ** [http://enzyme.expasy.org/EC/1.5.1.38 ec-1.5.1.38] * direction: ** left-to-right == Reaction formula == * 1 FM...")
(Created page with "Category:reaction == Reaction THI-P-SYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.3 ec-2.5.1.3] * direction: ** left-to-right * common-name: ** thiamine ph...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12444 ==
+
== Reaction THI-P-SYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.1.38 ec-1.5.1.38]
+
** [http://enzyme.expasy.org/EC/2.5.1.3 ec-2.5.1.3]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** thiamine phosphate synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FMN]][c] '''+''' 1 [[NADPH]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[FMNH2]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS13015]]
+
* Gene: [[FSU_RS00840]]
−
** Category: [[manual]]
+
** Category: [[annotation]]
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS14650]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ALKANEMONOX-PWY]], two-component alkanesulfonate monooxygenase:
+
* [[PWY-6897]], thiamine salvage II:
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7723]], bacterial bioluminescence:
+
* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes):
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast):
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7356]], thiamine salvage IV (yeast):
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21626 21626]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22329 22329]
−
{{#set: ec-number=ec-1.5.1.38}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P41835 P41835]
 +
** [http://www.uniprot.org/uniprot/P71350 P71350]
 +
** [http://www.uniprot.org/uniprot/O25514 O25514]
 +
** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
 +
** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
 +
** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
 +
** [http://www.uniprot.org/uniprot/P30137 P30137]
 +
** [http://www.uniprot.org/uniprot/P39594 P39594]
 +
** [http://www.uniprot.org/uniprot/P40386 P40386]
 +
** [http://www.uniprot.org/uniprot/P72965 P72965]
 +
** [http://www.uniprot.org/uniprot/O48881 O48881]
 +
** [http://www.uniprot.org/uniprot/O34294 O34294]
 +
** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
 +
{{#set: ec-number=ec-2.5.1.3}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=thiamine phosphate synthase}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
−
{{#set: reconstruction source=reactions_add_147_emile_annot}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=plantarum|ecoli|faecalibacterium|bthetaiotaomicron|genome|bifidobacterium}}

Revision as of 07:17, 24 September 2020

Reaction THI-P-SYN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • thiamine phosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6897, thiamine salvage II:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6908, thiamine diphosphate biosynthesis IV (eukaryotes):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast):
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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