Difference between revisions of "FSU RS13425"

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(Created page with "Category:reaction == Reaction PROTEIN-TYROSINE-PHOSPHATASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.3.48 ec-3.1.3.48] * direction: ** left-to-right * common...")
(Created page with "Category:reaction == Reaction DIHYDROOROT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3] * direction: ** reversible * common-name: ** dihydroorota...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROTEIN-TYROSINE-PHOSPHATASE-RXN ==
+
== Reaction DIHYDROOROT-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.48 ec-3.1.3.48]
+
** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** protein-tyrosine-phosphatase
+
** dihydroorotase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Protein-tyrosine-phosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[Protein-Tyrosines]][c]
+
* 1 [[DI-H-OROTATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS04125]]
+
* Gene: [[FSU_RS07640]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS03160]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FISUC_RS02235]]
+
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS05740]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS01280]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5686]], UMP biosynthesis I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10685 10685]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24299 24299]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02585 R02585]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01993 R01993]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06800 P06800]
+
** [http://www.uniprot.org/uniprot/P08955 P08955]
−
** [http://www.uniprot.org/uniprot/P20483 P20483]
+
** [http://www.uniprot.org/uniprot/P27708 P27708]
−
** [http://www.uniprot.org/uniprot/P23748 P23748]
+
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
−
** [http://www.uniprot.org/uniprot/P20417 P20417]
+
** [http://www.uniprot.org/uniprot/Q58885 Q58885]
−
** [http://www.uniprot.org/uniprot/P18433 P18433]
+
** [http://www.uniprot.org/uniprot/Q9PIN6 Q9PIN6]
−
** [http://www.uniprot.org/uniprot/P24666 P24666]
+
** [http://www.uniprot.org/uniprot/P25995 P25995]
−
** [http://www.uniprot.org/uniprot/Q06180 Q06180]
+
** [http://www.uniprot.org/uniprot/P20051 P20051]
−
** [http://www.uniprot.org/uniprot/P30307 P30307]
+
** [http://www.uniprot.org/uniprot/P06204 P06204]
−
** [http://www.uniprot.org/uniprot/P25044 P25044]
+
** [http://www.uniprot.org/uniprot/P05020 P05020]
−
** [http://www.uniprot.org/uniprot/P27574 P27574]
+
** [http://www.uniprot.org/uniprot/P31301 P31301]
−
** [http://www.uniprot.org/uniprot/P29074 P29074]
+
** [http://www.uniprot.org/uniprot/Q9PNA0 Q9PNA0]
−
** [http://www.uniprot.org/uniprot/P26045 P26045]
+
** [http://www.uniprot.org/uniprot/Q9JVD6 Q9JVD6]
−
** [http://www.uniprot.org/uniprot/P35234 P35234]
+
** [http://www.uniprot.org/uniprot/P46538 P46538]
−
** [http://www.uniprot.org/uniprot/P35832 P35832]
+
** [http://www.uniprot.org/uniprot/P20054 P20054]
−
** [http://www.uniprot.org/uniprot/P30304 P30304]
+
** [http://www.uniprot.org/uniprot/P05990 P05990]
−
** [http://www.uniprot.org/uniprot/Q03019 Q03019]
+
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
−
** [http://www.uniprot.org/uniprot/P11064 P11064]
+
** [http://www.uniprot.org/uniprot/P72934 P72934]
−
** [http://www.uniprot.org/uniprot/P30306 P30306]
+
** [http://www.uniprot.org/uniprot/P74438 P74438]
−
** [http://www.uniprot.org/uniprot/P30309 P30309]
+
** [http://www.uniprot.org/uniprot/O04904 O04904]
−
** [http://www.uniprot.org/uniprot/P43378 P43378]
+
** [http://www.uniprot.org/uniprot/P72170 P72170]
−
** [http://www.uniprot.org/uniprot/P29349 P29349]
+
** [http://www.uniprot.org/uniprot/O76138 O76138]
−
** [http://www.uniprot.org/uniprot/P29351 P29351]
+
** [http://www.uniprot.org/uniprot/O27199 O27199]
−
** [http://www.uniprot.org/uniprot/Q9W0G1 Q9W0G1]
+
** [http://www.uniprot.org/uniprot/P48795 P48795]
−
** [http://www.uniprot.org/uniprot/P23471 P23471]
 
−
** [http://www.uniprot.org/uniprot/P35235 P35235]
 
−
** [http://www.uniprot.org/uniprot/P08575 P08575]
 
−
** [http://www.uniprot.org/uniprot/P18052 P18052]
 
−
** [http://www.uniprot.org/uniprot/P35822 P35822]
 
−
** [http://www.uniprot.org/uniprot/P23470 P23470]
 
−
** [http://www.uniprot.org/uniprot/P34138 P34138]
 
−
** [http://www.uniprot.org/uniprot/Q24495 Q24495]
 
−
** [http://www.uniprot.org/uniprot/Q9W4F5 Q9W4F5]
 
−
** [http://www.uniprot.org/uniprot/Q15426 Q15426]
 
−
** [http://www.uniprot.org/uniprot/P41499 P41499]
 
−
** [http://www.uniprot.org/uniprot/Q28613 Q28613]
 
−
** [http://www.uniprot.org/uniprot/Q28182 Q28182]
 
−
** [http://www.uniprot.org/uniprot/P15273 P15273]
 
−
** [http://www.uniprot.org/uniprot/Q91870 Q91870]
 
−
** [http://www.uniprot.org/uniprot/Q91976 Q91976]
 
−
** [http://www.uniprot.org/uniprot/Q12923 Q12923]
 
−
** [http://www.uniprot.org/uniprot/P41893 P41893]
 
−
** [http://www.uniprot.org/uniprot/Q62132 Q62132]
 
−
** [http://www.uniprot.org/uniprot/Q92124 Q92124]
 
−
** [http://www.uniprot.org/uniprot/P23468 P23468]
 
−
** [http://www.uniprot.org/uniprot/Q62917 Q62917]
 
−
** [http://www.uniprot.org/uniprot/Q64696 Q64696]
 
−
** [http://www.uniprot.org/uniprot/P40347 P40347]
 
−
** [http://www.uniprot.org/uniprot/P16620 P16620]
 
−
** [http://www.uniprot.org/uniprot/P30305 P30305]
 
−
** [http://www.uniprot.org/uniprot/P29352 P29352]
 
−
** [http://www.uniprot.org/uniprot/Q05909 Q05909]
 
−
** [http://www.uniprot.org/uniprot/Q91871 Q91871]
 
−
** [http://www.uniprot.org/uniprot/P49446 P49446]
 
−
** [http://www.uniprot.org/uniprot/Q9CDL7 Q9CDL7]
 
−
** [http://www.uniprot.org/uniprot/P30311 P30311]
 
−
** [http://www.uniprot.org/uniprot/Q64487 Q64487]
 
−
** [http://www.uniprot.org/uniprot/Q9JU65 Q9JU65]
 
−
** [http://www.uniprot.org/uniprot/P35992 P35992]
 
−
** [http://www.uniprot.org/uniprot/P0AAB2 P0AAB2]
 
−
** [http://www.uniprot.org/uniprot/Q9PN39 Q9PN39]
 
−
** [http://www.uniprot.org/uniprot/Q16825 Q16825]
 
−
** [http://www.uniprot.org/uniprot/Q12913 Q12913]
 
−
** [http://www.uniprot.org/uniprot/P48967 P48967]
 
−
** [http://www.uniprot.org/uniprot/Q60998 Q60998]
 
−
** [http://www.uniprot.org/uniprot/Q90815 Q90815]
 
−
** [http://www.uniprot.org/uniprot/Q90816 Q90816]
 
−
** [http://www.uniprot.org/uniprot/Q90817 Q90817]
 
−
** [http://www.uniprot.org/uniprot/P30310 P30310]
 
−
** [http://www.uniprot.org/uniprot/Q62604 Q62604]
 
−
** [http://www.uniprot.org/uniprot/Q64605 Q64605]
 
−
** [http://www.uniprot.org/uniprot/Q05209 Q05209]
 
−
** [http://www.uniprot.org/uniprot/Q60673 Q60673]
 
−
** [http://www.uniprot.org/uniprot/Q62130 Q62130]
 
−
** [http://www.uniprot.org/uniprot/Q15678 Q15678]
 
−
** [http://www.uniprot.org/uniprot/Q92932 Q92932]
 
−
** [http://www.uniprot.org/uniprot/Q90687 Q90687]
 
−
** [http://www.uniprot.org/uniprot/P79923 P79923]
 
−
** [http://www.uniprot.org/uniprot/O00197 O00197]
 
−
** [http://www.uniprot.org/uniprot/Q61042 Q61042]
 
−
** [http://www.uniprot.org/uniprot/Q9ERM5 Q9ERM5]
 
−
** [http://www.uniprot.org/uniprot/P35236 P35236]
 
−
** [http://www.uniprot.org/uniprot/P35821 P35821]
 
−
** [http://www.uniprot.org/uniprot/Q06124 Q06124]
 
−
** [http://www.uniprot.org/uniprot/O13016 O13016]
 
−
** [http://www.uniprot.org/uniprot/P23467 P23467]
 
−
** [http://www.uniprot.org/uniprot/P23469 P23469]
 
−
** [http://www.uniprot.org/uniprot/P35233 P35233]
 
−
** [http://www.uniprot.org/uniprot/P30634 P30634]
 
−
** [http://www.uniprot.org/uniprot/P28827 P28827]
 
−
** [http://www.uniprot.org/uniprot/P28828 P28828]
 
−
** [http://www.uniprot.org/uniprot/Q64497 Q64497]
 
−
** [http://www.uniprot.org/uniprot/P29350 P29350]
 
−
** [http://www.uniprot.org/uniprot/P30303 P30303]
 
−
** [http://www.uniprot.org/uniprot/P32586 P32586]
 
−
** [http://www.uniprot.org/uniprot/P32587 P32587]
 
−
** [http://www.uniprot.org/uniprot/Q02256 Q02256]
 
−
** [http://www.uniprot.org/uniprot/Q8VBV0 Q8VBV0]
 
−
** [http://www.uniprot.org/uniprot/Q8R169 Q8R169]
 
−
** [http://www.uniprot.org/uniprot/Q64512 Q64512]
 
−
** [http://www.uniprot.org/uniprot/Q29029 Q29029]
 
−
** [http://www.uniprot.org/uniprot/P38148 P38148]
 
−
** [http://www.uniprot.org/uniprot/Q64604 Q64604]
 
−
** [http://www.uniprot.org/uniprot/Q63745 Q63745]
 
−
** [http://www.uniprot.org/uniprot/P39155 P39155]
 
−
** [http://www.uniprot.org/uniprot/Q64494 Q64494]
 
−
** [http://www.uniprot.org/uniprot/Q62728 Q62728]
 
−
** [http://www.uniprot.org/uniprot/Q64502 Q64502]
 
−
** [http://www.uniprot.org/uniprot/Q64504 Q64504]
 
−
** [http://www.uniprot.org/uniprot/Q46630 Q46630]
 
−
** [http://www.uniprot.org/uniprot/Q17024 Q17024]
 
−
** [http://www.uniprot.org/uniprot/P35831 P35831]
 
−
** [http://www.uniprot.org/uniprot/Q00684 Q00684]
 
−
** [http://www.uniprot.org/uniprot/Q16827 Q16827]
 
−
** [http://www.uniprot.org/uniprot/P06652 P06652]
 
−
** [http://www.uniprot.org/uniprot/P29461 P29461]
 
−
** [http://www.uniprot.org/uniprot/Q29500 Q29500]
 
−
** [http://www.uniprot.org/uniprot/Q62370 Q62370]
 
−
** [http://www.uniprot.org/uniprot/Q92735 Q92735]
 
−
** [http://www.uniprot.org/uniprot/Q45408 Q45408]
 
−
** [http://www.uniprot.org/uniprot/O82710 O82710]
 
−
** [http://www.uniprot.org/uniprot/O88488 O88488]
 
−
** [http://www.uniprot.org/uniprot/O88902 O88902]
 
−
** [http://www.uniprot.org/uniprot/O94044 O94044]
 
−
** [http://www.uniprot.org/uniprot/O44329 O44329]
 
−
** [http://www.uniprot.org/uniprot/O76282 O76282]
 
−
** [http://www.uniprot.org/uniprot/Q98936 Q98936]
 
−
** [http://www.uniprot.org/uniprot/Q91054 Q91054]
 
−
** [http://www.uniprot.org/uniprot/Q22582 Q22582]
 
−
** [http://www.uniprot.org/uniprot/Q39491 Q39491]
 
−
** [http://www.uniprot.org/uniprot/O65190 O65190]
 
−
** [http://www.uniprot.org/uniprot/P16621 P16621]
 
−
** [http://www.uniprot.org/uniprot/P10586 P10586]
 
−
** [http://www.uniprot.org/uniprot/Q64224 Q64224]
 
−
** [http://www.uniprot.org/uniprot/P18031 P18031]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-3.1.3.48}}
+
{{#set: ec-number=ec-3.5.2.3}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=protein-tyrosine-phosphatase}}
+
{{#set: common-name=dihydroorotase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=plantarum|ecoli|faecalibacterium|genome|bifidobacterium}}

Revision as of 07:18, 24 September 2020

Reaction DIHYDROOROT-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • dihydroorotase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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