Difference between revisions of "FSU RS01445"

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(Created page with "Category:reaction == Reaction METHIONYL-TRNA-FORMYLTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.9 ec-2.1.2.9] * direction: ** left-to-right * comm...")
(Created page with "Category:reaction == Reaction RXN-16380 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain fatt...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHIONYL-TRNA-FORMYLTRANSFERASE-RXN ==
+
== Reaction RXN-16380 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.9 ec-2.1.2.9]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** methionyl-trna formyltransferase
+
** long-chain fatty acid--coa ligase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[L-methionyl-tRNAfmet]][c] '''=>''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS13195]]
+
* Gene: [[FISUC_RS12045]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FISUC_RS11230]]
+
* Gene: [[FSU_RS14015]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants):
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: ec-number=ec-6.2.1.3}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24381 24381]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P94463 P94463]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
 
−
** [http://www.uniprot.org/uniprot/P50932 P50932]
 
−
** [http://www.uniprot.org/uniprot/P47605 P47605]
 
−
** [http://www.uniprot.org/uniprot/P44787 P44787]
 
−
** [http://www.uniprot.org/uniprot/P56461 P56461]
 
−
** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
 
−
** [http://www.uniprot.org/uniprot/O51091 O51091]
 
−
** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
 
−
** [http://www.uniprot.org/uniprot/P23882 P23882]
 
−
** [http://www.uniprot.org/uniprot/P32785 P32785]
 
−
** [http://www.uniprot.org/uniprot/P75235 P75235]
 
−
** [http://www.uniprot.org/uniprot/Q55163 Q55163]
 
−
{{#set: ec-number=ec-2.1.2.9}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=methionyl-trna formyltransferase}}
+
{{#set: common-name=long-chain fatty acid--coa ligase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=genome|bthetaiotaomicron|faecalibacterium}}

Revision as of 07:18, 24 September 2020

Reaction RXN-16380

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid--coa ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5989, stearate biosynthesis II (bacteria and plants):
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS01445&oldid=34576"