Difference between revisions of "FSU RS04505"
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(Created page with "Category:reaction == Reaction RXN-11592 == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.177 ec-2.1.1.177] * direction: ** left-to-right * common-name: ** 23s rrna (p...") |
(Created page with "Category:reaction == Reaction ASPARTATEKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.4 ec-2.7.2.4] * direction: ** left-to-right * common-name: ** aspartat...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ASPARTATEKIN-RXN == |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.7.2.4 ec-2.7.2.4] |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** aspartate kinase |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[L-BETA-ASPARTYL-P]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[FISUC_RS06845]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[FSU_RS08755]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-2941]], L-lysine biosynthesis II: | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6559]], spermidine biosynthesis II: | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5097]], L-lysine biosynthesis VI: | ||
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-2942]], L-lysine biosynthesis III: | ||
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7153]], grixazone biosynthesis: | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[P101-PWY]], ectoine biosynthesis: | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[HOMOSERSYN-PWY]], L-homoserine biosynthesis: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6562]], norspermidine biosynthesis: | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7977]], L-methionine biosynthesis IV (archaea): | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6160]], 3-dehydroquinate biosynthesis II (archaea): | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23779 23779] |
− | {{#set: ec-number=ec-2. | + | * LIGAND-RXN: |
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00480 R00480] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P08495 P08495] | ||
+ | ** [http://www.uniprot.org/uniprot/P44505 P44505] | ||
+ | ** [http://www.uniprot.org/uniprot/P27725 P27725] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04795 Q04795] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57991 Q57991] | ||
+ | ** [http://www.uniprot.org/uniprot/P00561 P00561] | ||
+ | ** [http://www.uniprot.org/uniprot/P00562 P00562] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHT4 Q9PHT4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTN3 Q9JTN3] | ||
+ | ** [http://www.uniprot.org/uniprot/P53553 P53553] | ||
+ | ** [http://www.uniprot.org/uniprot/P10869 P10869] | ||
+ | ** [http://www.uniprot.org/uniprot/P08660 P08660] | ||
+ | ** [http://www.uniprot.org/uniprot/P26512 P26512] | ||
+ | ** [http://www.uniprot.org/uniprot/P37142 P37142] | ||
+ | ** [http://www.uniprot.org/uniprot/P41403 P41403] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A4Z9 P0A4Z9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SA18 Q9SA18] | ||
+ | ** [http://www.uniprot.org/uniprot/P49079 P49079] | ||
+ | ** [http://www.uniprot.org/uniprot/P49080 P49080] | ||
+ | ** [http://www.uniprot.org/uniprot/P93402 P93402] | ||
+ | ** [http://www.uniprot.org/uniprot/O81852 O81852] | ||
+ | ** [http://www.uniprot.org/uniprot/O63067 O63067] | ||
+ | ** [http://www.uniprot.org/uniprot/O65027 O65027] | ||
+ | </div> | ||
+ | {{#set: ec-number=ec-2.7.2.4}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=aspartate kinase}} |
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=11}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=orthofinder|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=genome}} | + | {{#set: reconstruction source=genome|bthetaiotaomicron|plantarum|ecoli}} |
Revision as of 07:18, 24 September 2020
Contents
Reaction ASPARTATEKIN-RXN
- ec-number:
- direction:
- left-to-right
- common-name:
- aspartate kinase
Reaction formula
- 1 ATP[c] + 1 L-ASPARTATE[c] => 1 ADP[c] + 1 L-BETA-ASPARTYL-P[c]
Gene(s) associated with this reaction
- Gene: FISUC_RS06845
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: FSU_RS08755
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: bthetaiotaomicron, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: plantarum, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-2941, L-lysine biosynthesis II:
- 9 reactions found over 9 reactions in the full pathway
- PWY-6559, spermidine biosynthesis II:
- 4 reactions found over 4 reactions in the full pathway
- PWY-5097, L-lysine biosynthesis VI:
- 7 reactions found over 7 reactions in the full pathway
- DAPLYSINESYN-PWY, L-lysine biosynthesis I:
- 9 reactions found over 9 reactions in the full pathway
- PWY-2942, L-lysine biosynthesis III:
- 7 reactions found over 7 reactions in the full pathway
- PWY-7153, grixazone biosynthesis:
- 2 reactions found over 8 reactions in the full pathway
- P101-PWY, ectoine biosynthesis:
- 2 reactions found over 5 reactions in the full pathway
- HOMOSERSYN-PWY, L-homoserine biosynthesis:
- 3 reactions found over 3 reactions in the full pathway
- PWY-6562, norspermidine biosynthesis:
- 3 reactions found over 6 reactions in the full pathway
- PWY-7977, L-methionine biosynthesis IV (archaea):
- 4 reactions found over 4 reactions in the full pathway
- PWY-6160, 3-dehydroquinate biosynthesis II (archaea):
- 2 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- category: annotation; source: genome; tool: pathwaytools; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
- category: orthology; source: plantarum; tool: orthofinder; comment: n.a
External links