Difference between revisions of "FISUC RS12545"

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(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** aconitate hydratase == Reaction formula == * 1 CIT[c] '''<=>''' 1 C...")
(Created page with "Category:reaction == Reaction RXN-14699 == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.57 ec-2.4.2.57] * direction: ** left-to-right == Reaction formula == * 1 CM...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACONITATEDEHYDR-RXN ==
+
== Reaction RXN-14699 ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.4.2.57 ec-2.4.2.57]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** aconitate hydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CMP]][c] '''+''' 1 [[Pi]][c] '''=>''' 1 [[CYTOSINE]][c] '''+''' 1 [[RIBOSE-15-BISPHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS00920]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS02800]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea):
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
+
** '''5''' reactions found over '''10''' reactions in the full pathway
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''9''' reactions found over '''19''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II:
 
−
** '''8''' reactions found over '''12''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''8''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
−
** '''8''' reactions found over '''11''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''14''' reactions found over '''16''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: ec-number=ec-2.4.2.57}}
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
+
{{#set: nb gene associated=0}}
−
* PIR:
+
{{#set: nb pathway associated=1}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
+
{{#set: reconstruction category=manual}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
+
{{#set: reconstruction tool=curation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
+
{{#set: reconstruction comment=added for gap-filling}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
+
{{#set: reconstruction source=reactions_add_gp}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
 
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
 
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
 
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
 
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
 
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
 
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
 
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
 
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
 
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
 
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
 
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
 
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
 
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=aconitate hydratase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=15}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=ecoli|bifidobacterium|genome|bthetaiotaomicron}}
 

Revision as of 07:18, 24 September 2020

Reaction RXN-14699

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5532, nucleoside and nucleotide degradation (archaea):
    • 5 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12545&oldid=34588"