Difference between revisions of "FISUC RS12340"

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(Created page with "Category:reaction == Reaction DUDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
(Created page with "Category:reaction == Reaction RXN-11135 == * ec-number: ** [http://enzyme.expasy.org/EC/5.6.2.d ec-5.6.2.d] * direction: ** left-to-right == Reaction formula == * 1 [[ATP]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DUDPKIN-RXN ==
+
== Reaction RXN-11135 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
+
** [http://enzyme.expasy.org/EC/5.6.2.d ec-5.6.2.d]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** nucleoside-diphosphate kinase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Supercoiled-Duplex-DNAs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[Single-Stranded-DNAs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS15240]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** Category: [[orthology]]
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* Gene: [[FSU_RS10840]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[manual]]
−
* Gene: [[FSU_RS14500]]
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
−
** Category: [[annotation]]
+
* Gene: [[FSU_RS12975]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[manual]]
−
** Category: [[orthology]]
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* Gene: [[FSU_RS05375]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[manual]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
−
* Gene: [[FISUC_RS12530]]
+
* Gene: [[FSU_RS14745]]
−
** Category: [[annotation]]
+
** Category: [[manual]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
* Gene: [[FSU_RS07655]]
 +
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
* Gene: [[FSU_RS03265]]
 +
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
* Gene: [[FSU_RS05130]]
 +
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: ec-number=ec-5.6.2.d}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28583 28583]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02331 R02331]
 
−
{{#set: ec-number=ec-2.7.4.6}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=nucleoside-diphosphate kinase}}
+
{{#set: nb gene associated=7}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_147_emile_annot}}
−
{{#set: reconstruction source=ecoli|plantarum|genome|bthetaiotaomicron}}
 

Revision as of 07:18, 24 September 2020

Reaction RXN-11135

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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