Difference between revisions of "FSU RS07805"

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(Created page with "Category:reaction == Reaction GLUTSEMIALDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41] * direction: ** left-to-right * common-name: **...")
 
(Created page with "Category:reaction == Reaction 2TRANSKETO-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1] * direction: ** reversible * common-name: ** transketolase...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTSEMIALDEHYDROG-RXN ==
+
== Reaction 2TRANSKETO-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41]
+
** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** glutamate-5-semialdehyde dehydrogenase
+
** transketolase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS15310]]
+
* Gene: [[FSU_RS03880]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS01505]]
+
* Gene: [[FISUC_RS02000]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
+
* [[PWY-5723]], Rubisco shunt:
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
+
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-3341]], L-proline biosynthesis III:
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[P21-PWY]], pentose phosphate pathway (partial):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PROSYN-PWY]], L-proline biosynthesis I:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19543 19543]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03313 R03313]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JUK8 Q9JUK8]
+
** [http://www.uniprot.org/uniprot/P22976 P22976]
−
** [http://www.uniprot.org/uniprot/P45121 P45121]
+
** [http://www.uniprot.org/uniprot/P29401 P29401]
−
** [http://www.uniprot.org/uniprot/P53000 P53000]
+
** [http://www.uniprot.org/uniprot/P33570 P33570]
−
** [http://www.uniprot.org/uniprot/P07004 P07004]
+
** [http://www.uniprot.org/uniprot/P21725 P21725]
−
** [http://www.uniprot.org/uniprot/P17857 P17857]
+
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
−
** [http://www.uniprot.org/uniprot/P45638 P45638]
+
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
−
** [http://www.uniprot.org/uniprot/P54885 P54885]
+
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
−
** [http://www.uniprot.org/uniprot/O04226 O04226]
+
** [http://www.uniprot.org/uniprot/P21726 P21726]
−
{{#set: ec-number=ec-1.2.1.41}}
+
** [http://www.uniprot.org/uniprot/P47312 P47312]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
−
{{#set: common-name=glutamate-5-semialdehyde dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P43757 P43757]
 +
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
 +
** [http://www.uniprot.org/uniprot/P45694 P45694]
 +
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
 +
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
 +
** [http://www.uniprot.org/uniprot/P34736 P34736]
 +
** [http://www.uniprot.org/uniprot/P33315 P33315]
 +
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
 +
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
 +
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
 +
** [http://www.uniprot.org/uniprot/P46708 P46708]
 +
** [http://www.uniprot.org/uniprot/P75611 P75611]
 +
** [http://www.uniprot.org/uniprot/P73282 P73282]
 +
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
 +
** [http://www.uniprot.org/uniprot/O20250 O20250]
 +
** [http://www.uniprot.org/uniprot/O78327 O78327]
 +
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
 +
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
 +
** [http://www.uniprot.org/uniprot/P23254 P23254]
 +
** [http://www.uniprot.org/uniprot/P27302 P27302]
 +
** [http://www.uniprot.org/uniprot/P29277 P29277]
 +
</div>
 +
{{#set: ec-number=ec-2.2.1.1}}
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=transketolase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli|bifidobacterium|plantarum|faecalibacterium}}
+
{{#set: reconstruction source=genome}}

Revision as of 07:18, 24 September 2020

Reaction 2TRANSKETO-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • transketolase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 9 reactions found over 9 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 10 reactions found over 12 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 10 reactions found over 8 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial):
    • 3 reactions found over 3 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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