Difference between revisions of "FISUC RS05190"

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(Created page with "Category:reaction == Reaction ADENPHOSPHOR-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1] * direction: ** reversible == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction DIHYDROOROT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3] * direction: ** reversible * common-name: ** dihydroorota...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADENPHOSPHOR-RXN ==
+
== Reaction DIHYDROOROT-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1]
+
** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3]
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* common-name:
 +
** dihydroorotase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[ADENINE]][c] '''+''' 1 [[RIBOSE-1P]][c]
+
* 1 [[DI-H-OROTATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS07640]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS03160]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS05740]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS01280]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea):
+
* [[PWY-5686]], UMP biosynthesis I:
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6609]], adenine and adenosine salvage III:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[P121-PWY]], adenine and adenosine salvage I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6611]], adenine and adenosine salvage V:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY0-1296]], purine ribonucleosides degradation:
 
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27645 27645]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24299 24299]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01561 R01561]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01993 R01993]
−
{{#set: ec-number=ec-2.4.2.1}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P08955 P08955]
 +
** [http://www.uniprot.org/uniprot/P27708 P27708]
 +
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 +
** [http://www.uniprot.org/uniprot/Q58885 Q58885]
 +
** [http://www.uniprot.org/uniprot/Q9PIN6 Q9PIN6]
 +
** [http://www.uniprot.org/uniprot/P25995 P25995]
 +
** [http://www.uniprot.org/uniprot/P20051 P20051]
 +
** [http://www.uniprot.org/uniprot/P06204 P06204]
 +
** [http://www.uniprot.org/uniprot/P05020 P05020]
 +
** [http://www.uniprot.org/uniprot/P31301 P31301]
 +
** [http://www.uniprot.org/uniprot/Q9PNA0 Q9PNA0]
 +
** [http://www.uniprot.org/uniprot/Q9JVD6 Q9JVD6]
 +
** [http://www.uniprot.org/uniprot/P46538 P46538]
 +
** [http://www.uniprot.org/uniprot/P20054 P20054]
 +
** [http://www.uniprot.org/uniprot/P05990 P05990]
 +
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 +
** [http://www.uniprot.org/uniprot/P72934 P72934]
 +
** [http://www.uniprot.org/uniprot/P74438 P74438]
 +
** [http://www.uniprot.org/uniprot/O04904 O04904]
 +
** [http://www.uniprot.org/uniprot/P72170 P72170]
 +
** [http://www.uniprot.org/uniprot/O76138 O76138]
 +
** [http://www.uniprot.org/uniprot/O27199 O27199]
 +
** [http://www.uniprot.org/uniprot/P48795 P48795]
 +
</div>
 +
{{#set: ec-number=ec-3.5.2.3}}
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=dihydroorotase}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb gene associated=4}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gap-filling}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
−
{{#set: reconstruction source=reactions_add_gp}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=ecoli|bifidobacterium|faecalibacterium|genome|plantarum}}

Revision as of 07:56, 5 October 2020

Reaction DIHYDROOROT-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • dihydroorotase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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