Difference between revisions of "FSU RS11010"

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(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2...")
(Created page with "Category:reaction == Reaction RXN-16380 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain fatt...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-OXOACYL-ACP-SYNTH-RXN ==
+
== Reaction RXN-16380 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** beta-ketoacyl-acp synthase ii
+
** long-chain fatty acid--coa ligase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS01605]]
+
* Gene: [[FISUC_RS12045]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS01400]]
+
* Gene: [[FSU_RS14015]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FISUC_RS15210]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS15410]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated:
+
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: ec-number=ec-6.2.1.3}}
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P23902 P23902]
 
−
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
 
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
 
−
** [http://www.uniprot.org/uniprot/P43710 P43710]
 
−
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
 
−
** [http://www.uniprot.org/uniprot/O67612 O67612]
 
−
** [http://www.uniprot.org/uniprot/P20582 P20582]
 
−
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
 
−
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
 
−
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
 
−
** [http://www.uniprot.org/uniprot/P43711 P43711]
 
−
** [http://www.uniprot.org/uniprot/O25284 O25284]
 
−
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
 
−
** [http://www.uniprot.org/uniprot/O34340 O34340]
 
−
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
 
−
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
 
−
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
 
−
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 
−
** [http://www.uniprot.org/uniprot/P41175 P41175]
 
−
** [http://www.uniprot.org/uniprot/P31176 P31176]
 
−
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 
−
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 
−
** [http://www.uniprot.org/uniprot/P73283 P73283]
 
−
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 
−
** [http://www.uniprot.org/uniprot/O64485 O64485]
 
−
** [http://www.uniprot.org/uniprot/O65677 O65677]
 
−
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 
−
** [http://www.uniprot.org/uniprot/O23738 O23738]
 
−
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 
−
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 
−
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 
−
** [http://www.uniprot.org/uniprot/O54440 O54440]
 
−
** [http://www.uniprot.org/uniprot/P55338 P55338]
 
−
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
−
</div>
 
−
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.86|ec-2.3.1.41|ec-2.3.1.179}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=beta-ketoacyl-acp synthase ii}}
+
{{#set: common-name=long-chain fatty acid--coa ligase}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=faecalibacterium|genome|bthetaiotaomicron}}

Revision as of 07:57, 5 October 2020

Reaction RXN-16380

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid--coa ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5989, stearate biosynthesis II (bacteria and plants):
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS11010&oldid=40030"