Difference between revisions of "FSU RS07805"

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(Created page with "Category:reaction == Reaction 2TRANSKETO-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1] * direction: ** reversible * common-name: ** transketolase...")
(Created page with "Category:reaction == Reaction TRYPTOPHAN--TRNA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2] * direction: ** left-to-right * common-name:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2TRANSKETO-RXN ==
+
== Reaction TRYPTOPHAN--TRNA-LIGASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]
+
** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** transketolase
+
** tryptophan--trna ligase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS03880]]
+
* Gene: [[FISUC_RS02435]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS02000]]
+
* Gene: [[FSU_RS04325]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5723]], Rubisco shunt:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[P21-PWY]], pentose phosphate pathway (partial):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
Line 36: Line 24:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24081 24081]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22976 P22976]
+
** [http://www.uniprot.org/uniprot/P23381 P23381]
−
** [http://www.uniprot.org/uniprot/P29401 P29401]
+
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
−
** [http://www.uniprot.org/uniprot/P33570 P33570]
+
** [http://www.uniprot.org/uniprot/O84589 O84589]
−
** [http://www.uniprot.org/uniprot/P21725 P21725]
+
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
−
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
+
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
−
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
+
** [http://www.uniprot.org/uniprot/P43835 P43835]
−
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
+
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
−
** [http://www.uniprot.org/uniprot/P21726 P21726]
+
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
−
** [http://www.uniprot.org/uniprot/P47312 P47312]
+
** [http://www.uniprot.org/uniprot/O26352 O26352]
−
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
+
** [http://www.uniprot.org/uniprot/O51038 O51038]
−
** [http://www.uniprot.org/uniprot/P43757 P43757]
+
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
−
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
+
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
−
** [http://www.uniprot.org/uniprot/P45694 P45694]
+
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
−
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
+
** [http://www.uniprot.org/uniprot/O83640 O83640]
−
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
+
** [http://www.uniprot.org/uniprot/P67590 P67590]
−
** [http://www.uniprot.org/uniprot/P34736 P34736]
+
** [http://www.uniprot.org/uniprot/O67115 O67115]
−
** [http://www.uniprot.org/uniprot/P33315 P33315]
+
** [http://www.uniprot.org/uniprot/P47372 P47372]
−
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
+
** [http://www.uniprot.org/uniprot/P32921 P32921]
−
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
+
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
−
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
+
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
−
** [http://www.uniprot.org/uniprot/P46708 P46708]
+
** [http://www.uniprot.org/uniprot/P75510 P75510]
−
** [http://www.uniprot.org/uniprot/P75611 P75611]
+
** [http://www.uniprot.org/uniprot/O42875 O42875]
−
** [http://www.uniprot.org/uniprot/P73282 P73282]
+
** [http://www.uniprot.org/uniprot/O96771 O96771]
−
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
+
** [http://www.uniprot.org/uniprot/P17248 P17248]
−
** [http://www.uniprot.org/uniprot/O20250 O20250]
+
** [http://www.uniprot.org/uniprot/P21656 P21656]
−
** [http://www.uniprot.org/uniprot/O78327 O78327]
+
** [http://www.uniprot.org/uniprot/P04803 P04803]
−
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
+
** [http://www.uniprot.org/uniprot/P00954 P00954]
−
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
 
−
** [http://www.uniprot.org/uniprot/P23254 P23254]
 
−
** [http://www.uniprot.org/uniprot/P27302 P27302]
 
−
** [http://www.uniprot.org/uniprot/P29277 P29277]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-2.2.1.1}}
+
{{#set: ec-number=ec-6.1.1.2}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=transketolase}}
+
{{#set: common-name=tryptophan--trna ligase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=genome}}
 
{{#set: reconstruction source=genome}}

Revision as of 07:57, 5 October 2020

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • tryptophan--trna ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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