Difference between revisions of "FISUC RS08330"

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(Created page with "Category:reaction == Reaction DTDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
 
(Created page with "Category:reaction == Reaction RXN-11475 == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.197 ec-2.1.1.197] * direction: ** left-to-right == Reaction formula == * 1 ...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DTDPKIN-RXN ==
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== Reaction RXN-11475 ==
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
+
** [http://enzyme.expasy.org/EC/2.1.1.197 ec-2.1.1.197]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** nucleoside-diphosphate kinase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
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* 1 [[MALONYL-ACP]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[Malonyl-acp-methyl-ester]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS14500]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS12530]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS15240]]
 
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** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
+
* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I:
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** '''11''' reactions found over '''13''' reactions in the full pathway
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 
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** '''6''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_ibrahim_23092020]]; tool: [[curation]]; comment: to improve flux
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27683 27683]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34900 34900]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
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** [http://www.genome.jp/dbget-bin/www_bget?R09543 R09543]
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{{#set: ec-number=ec-2.7.4.6}}
+
{{#set: ec-number=ec-2.1.1.197}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=nucleoside-diphosphate kinase}}
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{{#set: nb gene associated=0}}
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{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=1}}
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{{#set: nb pathway associated=7}}
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{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
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{{#set: reconstruction comment=to improve flux}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_ibrahim_23092020}}
−
{{#set: reconstruction source=bthetaiotaomicron|genome|ecoli|plantarum}}
 

Revision as of 07:57, 5 October 2020

Reaction RXN-11475

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6519, 8-amino-7-oxononanoate biosynthesis I:
    • 11 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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