Difference between revisions of "FISUC RS14280"

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(Created page with "Category:reaction == Reaction RXN-1961 == * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.19 ec-6.3.4.19] * direction: ** left-to-right * common-name: ** trna lysidine(...")
(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42] * direction: ** reversible * common-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-1961 ==
+
== Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.19 ec-6.3.4.19]
+
** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** trna lysidine(34) synthetase tils
+
** branched-chain amino acid aminotransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Cytidine-34-tRNAIle2]][c] '''+''' 1 [[LYS]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Lysidine-tRNA-Ile2]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[VAL]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS13965]]
+
* Gene: [[FSU_RS05135]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS00155]]
+
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS03245]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[VALSYN-PWY]], L-valine biosynthesis:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5057]], L-valine degradation II:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[VALDEG-PWY]], L-valine degradation I:
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43745 43745]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24816 24816]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R09597 R09597]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
−
{{#set: ec-number=ec-6.3.4.19}}
+
* UNIPROT:
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
−
{{#set: common-name=trna lysidine(34) synthetase tils}}
+
** [http://www.uniprot.org/uniprot/P38891 P38891]
 +
** [http://www.uniprot.org/uniprot/P47176 P47176]
 +
** [http://www.uniprot.org/uniprot/O86505 O86505]
 +
** [http://www.uniprot.org/uniprot/O14370 O14370]
 +
** [http://www.uniprot.org/uniprot/O32954 O32954]
 +
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
 +
{{#set: ec-number=ec-2.6.1.42}}
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=branched-chain amino acid aminotransferase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron|plantarum|genome|bifidobacterium}}

Revision as of 07:10, 9 October 2020

Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • branched-chain amino acid aminotransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ALANINE-VALINESYN-PWY, L-alanine biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway
  • VALSYN-PWY, L-valine biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5057, L-valine degradation II:
    • 2 reactions found over 3 reactions in the full pathway
  • VALDEG-PWY, L-valine degradation I:
    • 1 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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