Difference between revisions of "FISUC RS06860"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ASPARTATEKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.4 ec-2.7.2.4] * direction: ** left-to-right * common-name: ** aspartat...")
(Created page with "Category:reaction == Reaction THIOREDOXIN-REDUCT-NADPH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9] * direction: ** left-to-right == Reaction fo...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ASPARTATEKIN-RXN ==
+
== Reaction THIOREDOXIN-REDUCT-NADPH-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.2.4 ec-2.7.2.4]
+
** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** aspartate kinase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[L-BETA-ASPARTYL-P]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS06845]]
+
* Gene: [[FSU_RS02405]]
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS08755]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS05690]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS03090]]
 +
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS13400]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[THIOREDOX-PWY]], thioredoxin pathway:
−
* [[PWY-2941]], L-lysine biosynthesis II:
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6559]], spermidine biosynthesis II:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5097]], L-lysine biosynthesis VI:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2942]], L-lysine biosynthesis III:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7153]], grixazone biosynthesis:
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[P101-PWY]], ectoine biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[HOMOSERSYN-PWY]], L-homoserine biosynthesis:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6562]], norspermidine biosynthesis:
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7977]], L-methionine biosynthesis IV (archaea):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6160]], 3-dehydroquinate biosynthesis II (archaea):
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23779 23779]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00480 R00480]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08495 P08495]
+
** [http://www.uniprot.org/uniprot/Q05741 Q05741]
−
** [http://www.uniprot.org/uniprot/P44505 P44505]
+
** [http://www.uniprot.org/uniprot/P56431 P56431]
−
** [http://www.uniprot.org/uniprot/P27725 P27725]
+
** [http://www.uniprot.org/uniprot/O28718 O28718]
−
** [http://www.uniprot.org/uniprot/Q04795 Q04795]
+
** [http://www.uniprot.org/uniprot/P80880 P80880]
−
** [http://www.uniprot.org/uniprot/Q57991 Q57991]
+
** [http://www.uniprot.org/uniprot/P43496 P43496]
−
** [http://www.uniprot.org/uniprot/P00561 P00561]
+
** [http://www.uniprot.org/uniprot/P94284 P94284]
−
** [http://www.uniprot.org/uniprot/P00562 P00562]
+
** [http://www.uniprot.org/uniprot/O66790 O66790]
−
** [http://www.uniprot.org/uniprot/Q9PHT4 Q9PHT4]
+
** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
−
** [http://www.uniprot.org/uniprot/Q9JTN3 Q9JTN3]
+
** [http://www.uniprot.org/uniprot/P47348 P47348]
−
** [http://www.uniprot.org/uniprot/P53553 P53553]
+
** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
−
** [http://www.uniprot.org/uniprot/P10869 P10869]
+
** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
−
** [http://www.uniprot.org/uniprot/P08660 P08660]
+
** [http://www.uniprot.org/uniprot/O26804 O26804]
−
** [http://www.uniprot.org/uniprot/P26512 P26512]
+
** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
−
** [http://www.uniprot.org/uniprot/P37142 P37142]
+
** [http://www.uniprot.org/uniprot/P43788 P43788]
−
** [http://www.uniprot.org/uniprot/P41403 P41403]
+
** [http://www.uniprot.org/uniprot/Q58931 Q58931]
−
** [http://www.uniprot.org/uniprot/P0A4Z9 P0A4Z9]
+
** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
−
** [http://www.uniprot.org/uniprot/Q9SA18 Q9SA18]
+
** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
−
** [http://www.uniprot.org/uniprot/P49079 P49079]
+
** [http://www.uniprot.org/uniprot/P23160 P23160]
−
** [http://www.uniprot.org/uniprot/P49080 P49080]
+
** [http://www.uniprot.org/uniprot/P39916 P39916]
−
** [http://www.uniprot.org/uniprot/P93402 P93402]
+
** [http://www.uniprot.org/uniprot/Q39242 Q39242]
−
** [http://www.uniprot.org/uniprot/O81852 O81852]
+
** [http://www.uniprot.org/uniprot/Q39243 Q39243]
−
** [http://www.uniprot.org/uniprot/O63067 O63067]
+
** [http://www.uniprot.org/uniprot/P38816 P38816]
−
** [http://www.uniprot.org/uniprot/O65027 O65027]
+
** [http://www.uniprot.org/uniprot/Q25861 Q25861]
 +
** [http://www.uniprot.org/uniprot/P29509 P29509]
 +
** [http://www.uniprot.org/uniprot/P52213 P52213]
 +
** [http://www.uniprot.org/uniprot/Q16881 Q16881]
 +
** [http://www.uniprot.org/uniprot/P75531 P75531]
 +
** [http://www.uniprot.org/uniprot/P74746 P74746]
 +
** [http://www.uniprot.org/uniprot/P46843 P46843]
 +
** [http://www.uniprot.org/uniprot/O54535 O54535]
 +
** [http://www.uniprot.org/uniprot/Q39951 Q39951]
 +
** [http://www.uniprot.org/uniprot/Q92375 Q92375]
 +
** [http://www.uniprot.org/uniprot/P52215 P52215]
 +
** [http://www.uniprot.org/uniprot/P51978 P51978]
 
</div>
 
</div>
−
{{#set: ec-number=ec-2.7.2.4}}
+
{{#set: ec-number=ec-1.8.1.9}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aspartate kinase}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=11}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=plantarum|genome|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium}}

Revision as of 07:12, 9 October 2020

Reaction THIOREDOXIN-REDUCT-NADPH-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • THIOREDOX-PWY, thioredoxin pathway:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS06860&oldid=45491"