Difference between revisions of "FSU RS00180"

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(Created page with "Category:reaction == Reaction RXN-11839 == * ec-number: ** [http://enzyme.expasy.org/EC/5.4.99.25 ec-5.4.99.25] * direction: ** left-to-right * common-name: ** trna pseudo...")
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-NADP+-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.3 ec-1.4.1.3] * direction: ** reversible == Reaction...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11839 ==
+
== Reaction GLUTAMATE-DEHYDROGENASE-NADP+-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.4.99.25 ec-5.4.99.25]
+
** [http://enzyme.expasy.org/EC/1.4.1.3 ec-1.4.1.3]
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
−
* common-name:
 
−
** trna pseudouridine(55) synthase trub
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[tRNA-uridine55]][c] '''=>''' 1 [[tRNA-pseudouridine55]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS13520]]
 
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** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS11555]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[GLUDEG-I-PWY]], GABA shunt:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5766]], L-glutamate degradation X:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLUTAMATE-SYN2-PWY]], L-glutamate biosynthesis II:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_ibrahim_03112020]]; tool: [[curation]]; comment: to improve flux in adenosylcobalamin
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-5.4.99.25}}
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* UNIPROT:
−
{{#set: direction=left-to-right}}
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** [http://www.uniprot.org/uniprot/P49448 P49448]
−
{{#set: common-name=trna pseudouridine(55) synthase trub}}
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** [http://www.uniprot.org/uniprot/P00366 P00366]
−
{{#set: nb gene associated=2}}
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** [http://www.uniprot.org/uniprot/P00368 P00368]
−
{{#set: nb pathway associated=0}}
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** [http://www.uniprot.org/uniprot/P00367 P00367]
−
{{#set: reconstruction category=annotation}}
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** [http://www.uniprot.org/uniprot/Q7LZR0 Q7LZR0]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P10860 P10860]
−
{{#set: reconstruction comment=n.a}}
+
** [http://www.uniprot.org/uniprot/P26443 P26443]
−
{{#set: reconstruction source=genome}}
+
** [http://www.uniprot.org/uniprot/P80053 P80053]
 +
** [http://www.uniprot.org/uniprot/Q9UWM2 Q9UWM2]
 +
** [http://www.uniprot.org/uniprot/P42174 P42174]
 +
** [http://www.uniprot.org/uniprot/P52596 P52596]
 +
** [http://www.uniprot.org/uniprot/P96110 P96110]
 +
{{#set: ec-number=ec-1.4.1.3}}
 +
{{#set: direction=reversible}}
 +
{{#set: nb gene associated=0}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction tool=curation}}
 +
{{#set: reconstruction comment=to improve flux in adenosylcobalamin}}
 +
{{#set: reconstruction source=reactions_add_ibrahim_03112020}}

Revision as of 17:54, 3 November 2020

Reaction GLUTAMATE-DEHYDROGENASE-NADP+-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUDEG-I-PWY, GABA shunt:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5766, L-glutamate degradation X:
    • 1 reactions found over 1 reactions in the full pathway
  • ARGININE-SYN4-PWY, L-ornithine biosynthesis II:
    • 4 reactions found over 4 reactions in the full pathway
  • GLUTAMATE-SYN2-PWY, L-glutamate biosynthesis II:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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