Difference between revisions of "FSU RS04105"
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(Created page with "Category:reaction == Reaction RXN-14372 == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.18 ec-2.4.1.18] * direction: ** left-to-right * common-name: ** 1,4-alpha-glu...") |
(Created page with "Category:reaction == Reaction ASPDECARBOX-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.11 ec-4.1.1.11] * direction: ** left-to-right * common-name: ** asparta...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ASPDECARBOX-RXN == |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.1.1.11 ec-4.1.1.11] |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** 1 | + | ** aspartate 1-decarboxylase |
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 1 [[L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[B-ALANINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[FISUC_RS02275]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[FSU_RS04165]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-5155]], β-alanine biosynthesis III: |
− | ** ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: ec-number=ec- | + | * RHEA: |
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19498 19498] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00489 R00489] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P52999 P52999] | ||
+ | ** [http://www.uniprot.org/uniprot/O66773 O66773] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JZ56 Q9JZ56] | ||
+ | ** [http://www.uniprot.org/uniprot/P56065 P56065] | ||
+ | ** [http://www.uniprot.org/uniprot/P65660 P65660] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A790 P0A790] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X037 Q9X037] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZN30 Q9ZN30] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIK3 Q9PIK3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JU49 Q9JU49] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RWF1 Q9RWF1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55382 Q55382] | ||
+ | {{#set: ec-number=ec-4.1.1.11}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name=1 | + | {{#set: common-name=aspartate 1-decarboxylase}} |
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=orthofinder|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=genome}} | + | {{#set: reconstruction source=plantarum|genome|bthetaiotaomicron|ecoli}} |
Revision as of 17:54, 3 November 2020
Contents
Reaction ASPDECARBOX-RXN
- ec-number:
- direction:
- left-to-right
- common-name:
- aspartate 1-decarboxylase
Reaction formula
- 1 L-ASPARTATE[c] + 1 PROTON[c] => 1 B-ALANINE[c] + 1 CARBON-DIOXIDE[c]
Gene(s) associated with this reaction
- Gene: FISUC_RS02275
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: FSU_RS04165
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: bthetaiotaomicron, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: plantarum, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5155, β-alanine biosynthesis III:
- 1 reactions found over 1 reactions in the full pathway
Reconstruction information
- category: annotation; source: genome; tool: pathwaytools; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
- category: orthology; source: plantarum; tool: orthofinder; comment: n.a
- category: orthology; source: bthetaiotaomicron; tool: orthofinder; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: