Difference between revisions of "FISUC RS07440"

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(Created page with "Category:reaction == Reaction TRANS-RXN-343 == * direction: ** left-to-right == Reaction formula == * 1 ALPHA-RIBAZOLE[e] '''=>''' 1 ALPHA-RIBAZOLE[c] == Gene(s) a...")
(Created page with "Category:reaction == Reaction RXN0-5462 == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.5.1 ec-3.6.5.1] ** [http://enzyme.expasy.org/EC/3.6.5.2 ec-3.6.5.2] ** [http://...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRANS-RXN-343 ==
+
== Reaction RXN0-5462 ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.6.5.1 ec-3.6.5.1]
 +
** [http://enzyme.expasy.org/EC/3.6.5.2 ec-3.6.5.2]
 +
** [http://enzyme.expasy.org/EC/3.6.5.3 ec-3.6.5.3]
 +
** [http://enzyme.expasy.org/EC/3.6.5.4 ec-3.6.5.4]
 +
** [http://enzyme.expasy.org/EC/3.6.5.5 ec-3.6.5.5]
 +
** [http://enzyme.expasy.org/EC/3.6.5.6 ec-3.6.5.6]
 +
** [http://enzyme.expasy.org/EC/3.6.1.15 ec-3.6.1.15]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** gtpase hflx
 +
** ribosome small subunit-dependent gtpase a
 +
** gtpase
 +
** gtpase obge
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ALPHA-RIBAZOLE]][e] '''=>''' 1 [[ALPHA-RIBAZOLE]][c]
+
* 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FSU_RS01580]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS03610]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS03025]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS01145]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS00240]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS15385]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS01730]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS02110]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7975]], adenosylcobalamin biosynthesis from adenosylcobinamide-GDP II:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_ibrahim_23092020]]; tool: [[curation]]; comment: to improve flux
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19670 19670]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00335 R00335]
 +
{{#set: ec-number=ec-3.6.5.1|ec-3.6.5.5|ec-3.6.5.4|ec-3.6.5.2|ec-3.6.5.6|ec-3.6.5.3|ec-3.6.1.15}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=ribosome small subunit-dependent gtpase a|gtpase hflx|gtpase obge|gtpase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=8}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=to improve flux}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
−
{{#set: reconstruction source=reactions_add_ibrahim_23092020}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=genome|ecoli}}

Revision as of 17:54, 3 November 2020

Reaction RXN0-5462

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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