Difference between revisions of "FISUC RS06860"

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(Created page with "Category:reaction == Reaction THIOREDOXIN-REDUCT-NADPH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9] * direction: ** left-to-right == Reaction fo...")
(Created page with "Category:reaction == Reaction DIHYDROOROT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3] * direction: ** reversible * common-name: ** dihydroorota...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THIOREDOXIN-REDUCT-NADPH-RXN ==
+
== Reaction DIHYDROOROT-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9]
+
** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** dihydroorotase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADPH]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
+
* 1 [[DI-H-OROTATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS02405]]
+
* Gene: [[FSU_RS03160]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS05690]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS03090]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS13400]]
+
* Gene: [[FISUC_RS05740]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS01280]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS07640]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[THIOREDOX-PWY]], thioredoxin pathway:
+
* [[PWY-7790]], UMP biosynthesis II:
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24299 24299]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01993 R01993]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q05741 Q05741]
+
** [http://www.uniprot.org/uniprot/P08955 P08955]
−
** [http://www.uniprot.org/uniprot/P56431 P56431]
+
** [http://www.uniprot.org/uniprot/P27708 P27708]
−
** [http://www.uniprot.org/uniprot/O28718 O28718]
+
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
−
** [http://www.uniprot.org/uniprot/P80880 P80880]
+
** [http://www.uniprot.org/uniprot/Q58885 Q58885]
−
** [http://www.uniprot.org/uniprot/P43496 P43496]
+
** [http://www.uniprot.org/uniprot/Q9PIN6 Q9PIN6]
−
** [http://www.uniprot.org/uniprot/P94284 P94284]
+
** [http://www.uniprot.org/uniprot/P25995 P25995]
−
** [http://www.uniprot.org/uniprot/O66790 O66790]
+
** [http://www.uniprot.org/uniprot/P20051 P20051]
−
** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
+
** [http://www.uniprot.org/uniprot/P06204 P06204]
−
** [http://www.uniprot.org/uniprot/P47348 P47348]
+
** [http://www.uniprot.org/uniprot/P05020 P05020]
−
** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
+
** [http://www.uniprot.org/uniprot/P31301 P31301]
−
** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
+
** [http://www.uniprot.org/uniprot/Q9PNA0 Q9PNA0]
−
** [http://www.uniprot.org/uniprot/O26804 O26804]
+
** [http://www.uniprot.org/uniprot/Q9JVD6 Q9JVD6]
−
** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
+
** [http://www.uniprot.org/uniprot/P46538 P46538]
−
** [http://www.uniprot.org/uniprot/P43788 P43788]
+
** [http://www.uniprot.org/uniprot/P20054 P20054]
−
** [http://www.uniprot.org/uniprot/Q58931 Q58931]
+
** [http://www.uniprot.org/uniprot/P05990 P05990]
−
** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
+
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
−
** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
+
** [http://www.uniprot.org/uniprot/P72934 P72934]
−
** [http://www.uniprot.org/uniprot/P23160 P23160]
+
** [http://www.uniprot.org/uniprot/P74438 P74438]
−
** [http://www.uniprot.org/uniprot/P39916 P39916]
+
** [http://www.uniprot.org/uniprot/O04904 O04904]
−
** [http://www.uniprot.org/uniprot/Q39242 Q39242]
+
** [http://www.uniprot.org/uniprot/P72170 P72170]
−
** [http://www.uniprot.org/uniprot/Q39243 Q39243]
+
** [http://www.uniprot.org/uniprot/O76138 O76138]
−
** [http://www.uniprot.org/uniprot/P38816 P38816]
+
** [http://www.uniprot.org/uniprot/O27199 O27199]
−
** [http://www.uniprot.org/uniprot/Q25861 Q25861]
+
** [http://www.uniprot.org/uniprot/P48795 P48795]
−
** [http://www.uniprot.org/uniprot/P29509 P29509]
 
−
** [http://www.uniprot.org/uniprot/P52213 P52213]
 
−
** [http://www.uniprot.org/uniprot/Q16881 Q16881]
 
−
** [http://www.uniprot.org/uniprot/P75531 P75531]
 
−
** [http://www.uniprot.org/uniprot/P74746 P74746]
 
−
** [http://www.uniprot.org/uniprot/P46843 P46843]
 
−
** [http://www.uniprot.org/uniprot/O54535 O54535]
 
−
** [http://www.uniprot.org/uniprot/Q39951 Q39951]
 
−
** [http://www.uniprot.org/uniprot/Q92375 Q92375]
 
−
** [http://www.uniprot.org/uniprot/P52215 P52215]
 
−
** [http://www.uniprot.org/uniprot/P51978 P51978]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-1.8.1.9}}
+
{{#set: ec-number=ec-3.5.2.3}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
 +
{{#set: common-name=dihydroorotase}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium}}
+
{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|ecoli}}

Revision as of 17:54, 3 November 2020

Reaction DIHYDROOROT-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • dihydroorotase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7790, UMP biosynthesis II:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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