Difference between revisions of "FSU RS07805"

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(Created page with "Category:reaction == Reaction RXN-14699 == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.57 ec-2.4.2.57] * direction: ** left-to-right == Reaction formula == * 1 CM...")
(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14] * d...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14699 ==
+
== Reaction KDPGALDOL-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.57 ec-2.4.2.57]
+
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
 +
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CMP]][c] '''+''' 1 [[Pi]][c] '''=>''' 1 [[CYTOSINE]][c] '''+''' 1 [[RIBOSE-15-BISPHOSPHATE]][c]
+
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FISUC_RS07950]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS09880]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea):
+
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
−
** '''5''' reactions found over '''10''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7310]], D-glucosaminate degradation:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7242]], D-fructuronate degradation:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-2.4.2.57}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P44480 P44480]
 +
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
 +
** [http://www.uniprot.org/uniprot/P00885 P00885]
 +
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
 +
** [http://www.uniprot.org/uniprot/O25729 O25729]
 +
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
 +
** [http://www.uniprot.org/uniprot/O83578 O83578]
 +
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
 +
** [http://www.uniprot.org/uniprot/P50846 P50846]
 +
** [http://www.uniprot.org/uniprot/P38448 P38448]
 +
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 +
** [http://www.uniprot.org/uniprot/P94802 P94802]
 +
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.14}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gap-filling}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
−
{{#set: reconstruction source=reactions_add_gp}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}

Revision as of 17:55, 3 November 2020

Reaction KDPGALDOL-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
    • 8 reactions found over 9 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY, Entner-Doudoroff shunt:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7310, D-glucosaminate degradation:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7242, D-fructuronate degradation:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6507, 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7562, 3,6-anhydro-α-L-galactopyranose degradation:
    • 2 reactions found over 7 reactions in the full pathway
  • GALACTUROCAT-PWY, D-galacturonate degradation I:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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