Difference between revisions of "FISUC RS04955"

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(Created page with "Category:reaction == Reaction ACETATEKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.15 ec-2.7.2.15] ** [http://enzyme.expasy.org/EC/2.7.2.1 ec-2.7.2.1] * di...")
(Created page with "Category:reaction == Reaction 3.4.21.89-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.4.21.89 ec-3.4.21.89] * direction: ** left-to-right * common-name: ** signal...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETATEKIN-RXN ==
+
== Reaction 3.4.21.89-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.2.15 ec-2.7.2.15]
+
** [http://enzyme.expasy.org/EC/3.4.21.89 ec-3.4.21.89]
−
** [http://enzyme.expasy.org/EC/2.7.2.1 ec-2.7.2.1]
 
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** acetate kinase
+
** signal peptidase i
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ACETYL-P]][c] '''+''' 1 [[ADP]][c]
+
* 1 [[Peptides-with-Leader-Sequence]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Leader-Sequences]][c] '''+''' 1 [[Peptides-holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS09410]]
+
* Gene: [[FISUC_RS08185]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[FSU_RS10115]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS07485]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS04650]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[P163-PWY]], L-lysine fermentation to acetate and butanoate:
 
−
** '''3''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''14''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY0-1312]], acetate and ATP formation from acetyl-CoA I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-8015]], glycine degradation (Stickland reaction):
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5482]], pyruvate fermentation to acetate II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[P3-PWY]], gallate degradation III (anaerobic):
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5485]], pyruvate fermentation to acetate IV:
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 
−
** '''9''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY0-1477]], ethanolamine utilization:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''9''' reactions found over '''24''' reactions in the full pathway
 
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 
−
** '''3''' reactions found over '''17''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''16''' reactions found over '''16''' reactions in the full pathway
 
−
* [[METH-ACETATE-PWY]], methanogenesis from acetate:
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P161-PWY]], acetylene degradation (anaerobic):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11355 11355]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00315 R00315]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JTM0 Q9JTM0]
+
** [http://www.uniprot.org/uniprot/Q9RUF9 Q9RUF9]
−
** [http://www.uniprot.org/uniprot/P38502 P38502]
+
** [http://www.uniprot.org/uniprot/Q9ZE32 Q9ZE32]
−
** [http://www.uniprot.org/uniprot/P37877 P37877]
+
** [http://www.uniprot.org/uniprot/Q9CDG2 Q9CDG2]
−
** [http://www.uniprot.org/uniprot/Q9PPL8 Q9PPL8]
+
** [http://www.uniprot.org/uniprot/Q9KPB1 Q9KPB1]
−
** [http://www.uniprot.org/uniprot/Q9CE36 Q9CE36]
+
** [http://www.uniprot.org/uniprot/Q9PBA0 Q9PBA0]
−
** [http://www.uniprot.org/uniprot/P47599 P47599]
+
** [http://www.uniprot.org/uniprot/Q57708 Q57708]
−
** [http://www.uniprot.org/uniprot/Q9CE35 Q9CE35]
+
** [http://www.uniprot.org/uniprot/O67088 O67088]
−
** [http://www.uniprot.org/uniprot/Q9JT07 Q9JT07]
+
** [http://www.uniprot.org/uniprot/Q9JV66 Q9JV66]
−
** [http://www.uniprot.org/uniprot/P44406 P44406]
+
** [http://www.uniprot.org/uniprot/Q9PP67 Q9PP67]
−
** [http://www.uniprot.org/uniprot/P0A6A3 P0A6A3]
+
** [http://www.uniprot.org/uniprot/Q9I5G7 Q9I5G7]
−
** [http://www.uniprot.org/uniprot/P73162 P73162]
+
** [http://www.uniprot.org/uniprot/Q8FF16 Q8FF16]
−
{{#set: ec-number=ec-2.7.2.15|ec-2.7.2.1}}
+
** [http://www.uniprot.org/uniprot/Q8XA33 Q8XA33]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P41026 P41026]
−
{{#set: common-name=acetate kinase}}
+
** [http://www.uniprot.org/uniprot/P41027 P41027]
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/P37943 P37943]
−
{{#set: nb pathway associated=14}}
+
** [http://www.uniprot.org/uniprot/Q57350 Q57350]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/Q7M0V9 Q7M0V9]
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
** [http://www.uniprot.org/uniprot/P0A1W2 P0A1W2]
 +
** [http://www.uniprot.org/uniprot/P26844 P26844]
 +
** [http://www.uniprot.org/uniprot/P28628 P28628]
 +
** [http://www.uniprot.org/uniprot/P41025 P41025]
 +
** [http://www.uniprot.org/uniprot/Q51876 Q51876]
 +
** [http://www.uniprot.org/uniprot/Q52697 Q52697]
 +
** [http://www.uniprot.org/uniprot/Q45225 Q45225]
 +
** [http://www.uniprot.org/uniprot/P72660 P72660]
 +
** [http://www.uniprot.org/uniprot/P73157 P73157]
 +
** [http://www.uniprot.org/uniprot/O69884 O69884]
 +
** [http://www.uniprot.org/uniprot/P00803 P00803]
 +
</div>
 +
{{#set: ec-number=ec-3.4.21.89}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=signal peptidase i}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=genome}}

Revision as of 19:08, 13 January 2021

Reaction 3.4.21.89-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • signal peptidase i

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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